diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 120 |
1 files changed, 67 insertions, 53 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 248bf39eff..3c69901a0a 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -49,11 +49,12 @@ #:use-module (gnu packages curl) #:use-module (gnu packages emacs) #:use-module (gnu packages emacs-xyz) + #:use-module (gnu packages fontutils) #:use-module (gnu packages gcc) #:use-module (gnu packages gtk) #:use-module (gnu packages gettext) #:use-module (gnu packages glib) - #:use-module (gnu packages haskell) + #:use-module (gnu packages haskell-xyz) #:use-module (gnu packages icu4c) #:use-module (gnu packages image) #:use-module (gnu packages java) @@ -157,14 +158,14 @@ simulation not wholly unlike BUGS. JAGS was written with three aims in mind: (define-public libxls (package (name "libxls") - (version "1.5.0") + (version "1.5.1") (source (origin (method url-fetch) (uri (string-append "https://github.com/libxls/libxls/releases/download/" "v" version "/libxls-" version ".tar.gz")) (sha256 - (base32 "00j2lrcvvhclmh3z9vy7myqq1br1jnnqkz2wzgk4a1gbg8c5afn5")))) + (base32 "0dam8qgbc5ykzaxmrjhpmfm8lnlcdk6cbpzyaya91qwwa80qbj1v")))) (build-system gnu-build-system) (home-page "https://github.com/libxls/libxls") (synopsis "Read binary (.xls) Excel spreadsheet files") @@ -181,7 +182,7 @@ This package also provides @command{xls2csv} to export Excel files to CSV.") (define r-with-tests (package (name "r-with-tests") - (version "3.6.0") + (version "3.6.1") (source (origin (method url-fetch) (uri (string-append "mirror://cran/src/base/R-" @@ -189,7 +190,7 @@ This package also provides @command{xls2csv} to export Excel files to CSV.") version ".tar.gz")) (sha256 (base32 - "02bmylmzrm9sdidirmwy233lghmd2346z725ca71ari68lzarz1n")))) + "128kifbq0w25y8aq77w289ddax5i5w2djcfsqgffrb3i7syrxajv")))) (build-system gnu-build-system) (arguments `(#:disallowed-references (,tzdata-for-tests) @@ -611,14 +612,14 @@ nonlinear mixed-effects models.") (define-public r-mgcv (package (name "r-mgcv") - (version "1.8-28") + (version "1.8-29") (source (origin (method url-fetch) (uri (cran-uri "mgcv" version)) (sha256 (base32 - "1snkpnkkigwrj9zm31j1nlivv9ls56imz263cv167hnmghiahpmm")))) + "1236gz25nap1aprbvcrqvmmnl6f8cvbjy8dcl4j968cpalqax5ww")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix) @@ -804,13 +805,13 @@ effects of different types of color-blindness.") (define-public r-digest (package (name "r-digest") - (version "0.6.20") + (version "0.6.21") (source (origin (method url-fetch) (uri (cran-uri "digest" version)) (sha256 - (base32 "1irhk2jaj9cg57cxprgyn1if06x121xwcxh1fzzn3148bl5lnrq5")))) + (base32 "0qycqchmv59fb6jp369d82mcx9xgbv70m18qzam0vrs8zkmajb17")))) (build-system r-build-system) ;; Vignettes require r-knitr, which requires r-digest, so we have to ;; disable them and the tests. @@ -1138,13 +1139,13 @@ legends.") (define-public r-ggplot2 (package (name "r-ggplot2") - (version "3.2.0") + (version "3.2.1") (source (origin (method url-fetch) (uri (cran-uri "ggplot2" version)) (sha256 - (base32 "1cvk9pw59kxx19kamqwa15h26rbznp0vvqpn7y8kgjssnrzqkdii")))) + (base32 "0mjswqiqcwm0aqxll16bx2kwa6c9km3aql87bdj4347n1ali94g3")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) @@ -1199,23 +1200,24 @@ agnes cluster diagrams.") (define-public r-gdtools (package (name "r-gdtools") - (version "0.1.9") + (version "0.2.0") (source (origin (method url-fetch) (uri (cran-uri "gdtools" version)) (sha256 (base32 - "0w4fihf52q5qxxk0lg36x6yvjjl8vw66y60ncdjs5fvnxqn5z2vb")))) + "1mvpkp8cj30fwd4bwlz96x3cff7yzfbfz7iswmf77zl0a6122inh")))) (build-system r-build-system) (native-inputs `(("pkg-config" ,pkg-config))) (inputs `(("cairo" ,cairo) + ("freetype2" ,freetype) ("zlib" ,zlib))) (propagated-inputs `(("r-rcpp" ,r-rcpp) - ("r-withr" ,r-withr))) + ("r-systemfonts" ,r-systemfonts))) (home-page "https://cran.r-project.org/web/packages/gdtools") (synopsis "Utilities for graphical rendering") (description @@ -1449,13 +1451,13 @@ emitter (http://pyyaml.org/wiki/LibYAML) for R.") (define-public r-knitr (package (name "r-knitr") - (version "1.24") + (version "1.25") (source (origin (method url-fetch) (uri (cran-uri "knitr" version)) (sha256 (base32 - "12bvs9fd61m7k7bq321qzrh2ccl9rq653s1anrvfb9s5ni1j0378")))) + "0lsc201a4f6xksmsklhr6gmhl0mxih0xhlcdvhs2ypzcx1pvkpnv")))) (build-system r-build-system) (propagated-inputs `(("r-evaluate" ,r-evaluate) @@ -1501,13 +1503,13 @@ from knitr Rmarkdown.") (define-public r-microbenchmark (package (name "r-microbenchmark") - (version "1.4-6") + (version "1.4-7") (source (origin (method url-fetch) (uri (cran-uri "microbenchmark" version)) (sha256 (base32 - "1sn1fxgzakm5iqbgc35g3k4yi0iqrkmwz33cvdrphrzh1lxnmi3s")))) + "1xl4m4yl4h2zcjiz8wsa7f3sh55qg2xr3sgpvz18rlix6b3173r6")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/microbenchmark/") (synopsis "Accurate timing functions for R") @@ -1828,13 +1830,13 @@ and density estimation.") (define-public r-chron (package (name "r-chron") - (version "2.3-53") + (version "2.3-54") (source (origin (method url-fetch) (uri (cran-uri "chron" version)) (sha256 (base32 - "02bkywwsxwrxc035hv51dxgdm1fjxdm7dn19ivifln59dfs1862j")))) + "0vc7dxqwx0jqzwszax6di3091npsxnhnbvr7sy7rlip0jqzarwqd")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/chron") (synopsis "Chronological R objects which can handle dates and times") @@ -1846,14 +1848,16 @@ times.") (define-public r-data-table (package (name "r-data-table") - (version "1.12.2") + (version "1.12.4") (source (origin (method url-fetch) (uri (cran-uri "data.table" version)) (sha256 (base32 - "1x929lwhai6nkppm4zvicyw5qh5va5sizp86r30qnfkh1n7w2mfv")))) + "0zdcbr4nixvl8ga4mp9pw1dfww35dzhzpb6ixajqasiri824m7i9")))) (build-system r-build-system) + (inputs + `(("zlib" ,zlib))) (home-page "https://github.com/Rdatatable/data.table/wiki") (synopsis "Enhanced version of data.frame R object") (description @@ -2023,14 +2027,14 @@ and environmental data in the framework of Euclidean exploratory methods.") (define-public r-xml2 (package (name "r-xml2") - (version "1.2.1") + (version "1.2.2") (source (origin (method url-fetch) (uri (cran-uri "xml2" version)) (sha256 (base32 - "0186d7r36xw1z9f8ajz35a0dz4ch6hmrjl9536yc7vq78v4vn5an")))) + "1x3q3a0xv8j0nx3hs4d3pfjm5g9nvaxmfrapba9f4nrkqi3z2l1h")))) (build-system r-build-system) (inputs `(("libxml2" ,libxml2) @@ -2097,13 +2101,13 @@ previous R versions and their release dates.") (define-public r-whisker (package (name "r-whisker") - (version "0.3-2") + (version "0.4") (source (origin (method url-fetch) (uri (cran-uri "whisker" version)) (sha256 (base32 - "0z4cn115gxcl086d6bnqr8afi67b6a7xqg6ivmk3l4ng1x8kcj28")))) + "1a7vz0dk95xfjvi38wbpw8vmf5qn3g8p490msz2rw0piwidmk1ks")))) (build-system r-build-system) (home-page "https://github.com/edwindj/whisker") (synopsis "Logicless mustache templating for R") @@ -2115,14 +2119,14 @@ limited to R.") (define-public r-backports (package (name "r-backports") - (version "1.1.4") + (version "1.1.5") (source (origin (method url-fetch) (uri (cran-uri "backports" version)) (sha256 (base32 - "00zz969vc2gfi5p9q65pzghq2bxm3p9zqgwqswkyz9rgybz5wjzf")))) + "0k19w68b2aihyj5mflw3732gkkzs78sssqdns960pdw3yfnkiv33")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/backports") (synopsis "Reimplementations of functions introduced since R 3.0.0") @@ -2436,18 +2440,24 @@ informative error messages when it's not available.") (define-public r-devtools (package (name "r-devtools") - (version "2.1.0") + (version "2.2.1") (source (origin (method url-fetch) (uri (cran-uri "devtools" version)) (sha256 (base32 - "0393v7nr22gr5g9afgrhq4ab3lwbqy6fd3shnmlhdpqam5357xy1")))) + "0i2f549hxkn0j1x1avkhwy68c9r48v9284j7x9cak2q6dfsqz61f")))) (build-system r-build-system) (propagated-inputs `(("r-callr" ,r-callr) ("r-cli" ,r-cli) + ("r-covr" ,r-covr) + ("r-crayon" ,r-crayon) + ("r-desc" ,r-desc) ("r-digest" ,r-digest) + ("r-dt" ,r-dt) + ("r-ellipsis" ,r-ellipsis) + ("r-glue" ,r-glue) ("r-git2r" ,r-git2r) ("r-httr" ,r-httr) ("r-jsonlite" ,r-jsonlite) @@ -2455,9 +2465,11 @@ informative error messages when it's not available.") ("r-pkgbuild" ,r-pkgbuild) ("r-pkgload" ,r-pkgload) ("r-rcmdcheck" ,r-rcmdcheck) - ("r-roxygen2" ,r-roxygen2) ("r-remotes" ,r-remotes) + ("r-rlang" ,r-rlang) + ("r-roxygen2" ,r-roxygen2) ("r-rstudioapi" ,r-rstudioapi) + ("r-rversions" ,r-rversions) ("r-sessioninfo" ,r-sessioninfo) ("r-testthat" ,r-testthat) ("r-usethis" ,r-usethis) @@ -2490,14 +2502,14 @@ were originally a part of the r-devtools package.") (define-public r-hms (package (name "r-hms") - (version "0.5.0") + (version "0.5.1") (source (origin (method url-fetch) (uri (cran-uri "hms" version)) (sha256 (base32 - "06snfqdczr0x0nbp7qnvwhlp2pw0wx9c2y3xb4gr1wrvbik74y58")))) + "1v4cxfpvp85la4gqla6b4q2bwx4jv1fxqwndcnjsibbnybz6wcvd")))) (build-system r-build-system) (propagated-inputs `(("r-rlang" ,r-rlang) @@ -2598,13 +2610,13 @@ well as additional utilities such as panel and axis annotation functions.") (define-public r-rcpparmadillo (package (name "r-rcpparmadillo") - (version "0.9.600.4.0") + (version "0.9.700.2.0") (source (origin (method url-fetch) (uri (cran-uri "RcppArmadillo" version)) (sha256 (base32 - "07jg2667xyhmp1fbcdi5nnhmkk81da76s9rlswfq4k2sjsmbfmr0")))) + "0g25w32dnqrvhnri8x4yxqawxd8qhn7w3m8d29nxxy0gybx3y8x9")))) (properties `((upstream-name . "RcppArmadillo"))) (build-system r-build-system) ;; All needed for vignettes @@ -2696,14 +2708,13 @@ certain criterion, e.g., it contains a certain regular file.") (define-public r-rmarkdown (package (name "r-rmarkdown") - (version "1.14") + (version "1.16") (source (origin (method url-fetch) (uri (cran-uri "rmarkdown" version)) (sha256 - (base32 - "0qfw5rkvwqpgix32g6qy9xrr50awmm146aqbm836xravih2b2dpn")))) + (base32 "1p11g9lma604ndrhvyvriqxxp91lardc543nmvmr49n1m7309qvz")))) (properties `((upstream-name . "rmarkdown"))) (build-system r-build-system) (propagated-inputs @@ -2718,7 +2729,7 @@ certain criterion, e.g., it contains a certain regular file.") ("r-xfun" ,r-xfun) ("r-yaml" ,r-yaml) ("ghc-pandoc" ,ghc-pandoc))) - (home-page "http://rmarkdown.rstudio.com") + (home-page "https://rmarkdown.rstudio.com") (synopsis "Convert R Markdown documents into a variety of formats") (description "This package provides tools to convert R Markdown documents into a @@ -2771,13 +2782,13 @@ and draw tables.") (define-public r-pkgconfig (package (name "r-pkgconfig") - (version "2.0.2") + (version "2.0.3") (source (origin (method url-fetch) (uri (cran-uri "pkgconfig" version)) (sha256 (base32 - "1jk9ip549xphb3anfixqv1yx5kidnndqgy9v3qjpmgmds5a7g695")))) + "0l1qph8zyi2sic3k2qcd7vlfl7rzfh1q7z7zvjkl5f7y1x2fy3rk")))) (build-system r-build-system) (home-page "https://github.com/gaborcsardi/pkgconfig") (synopsis "Private configuration for R packages") @@ -2938,13 +2949,13 @@ plotted and compared with the asymptotic curve.") (define-public r-lambda-r (package (name "r-lambda-r") - (version "1.2.3") + (version "1.2.4") (source (origin (method url-fetch) (uri (cran-uri "lambda.r" version)) (sha256 (base32 - "0cc6pszs6yccn0hgjpyn9gspv9aiva9d91ba0640i5m0l5xy7n0c")))) + "1mh1g0gsd58gng0hb29vww2yqb2jfs07kba5kxnnqck5j3izwlnj")))) (properties `((upstream-name . "lambda.r"))) (build-system r-build-system) (propagated-inputs @@ -3165,13 +3176,13 @@ using the multicore functionality of the parallel package.") (define-public r-dt (package (name "r-dt") - (version "0.8") + (version "0.9") (source (origin (method url-fetch) (uri (cran-uri "DT" version)) (sha256 (base32 - "08cfmv3d5awvd9h8648bvidcg2ak5pvl2p6vqwqwy1l82ia506ch")))) + "17han4560jv8mmfn4f8adrwh0x25fxz2qwd0sv7vv4iky5and8a7")))) (properties `((upstream-name . "DT"))) (build-system r-build-system) @@ -3645,13 +3656,13 @@ t-probabilities, quantiles, random deviates and densities.") (define-public r-matrixstats (package (name "r-matrixstats") - (version "0.54.0") + (version "0.55.0") (source (origin (method url-fetch) (uri (cran-uri "matrixStats" version)) (sha256 (base32 - "0vx00ldsg2zvdrjn49jxczk2c9iaabgvzgpdka5j02ihh7hv83cg")))) + "06fvx0rlaz80k0lkqq2n7v0309xpz7h7ss0m9kgyikp4xs8bvmhn")))) (properties `((upstream-name . "matrixStats"))) (build-system r-build-system) (native-inputs @@ -3748,25 +3759,28 @@ selection.") (define-public r-tidyr (package (name "r-tidyr") - (version "0.8.3") + (version "1.0.0") (source (origin (method url-fetch) (uri (cran-uri "tidyr" version)) (sha256 (base32 - "0dyc4b03wi65bk7j0ma0y188syh37h57wgxji82i0h8j6pn593x1")))) + "1403j0xd93l0r7qj738ryd5zc79hbcghrzybib3c3hrnaq5s78cj")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) + ("r-ellipsis" ,r-ellipsis) ("r-magrittr" ,r-magrittr) ("r-glue" ,r-glue) + ("r-lifecycle" ,r-lifecycle) ("r-purrr" ,r-purrr) ("r-rlang" ,r-rlang) ("r-tidyselect" ,r-tidyselect) ("r-rcpp" ,r-rcpp) ("r-stringi" ,r-stringi) - ("r-tibble" ,r-tibble))) + ("r-tibble" ,r-tibble) + ("r-vctrs" ,r-vctrs))) (home-page "https://github.com/hadley/tidyr") (synopsis "Tidy data with `spread()` and `gather()` functions") (description @@ -4276,7 +4290,7 @@ including: @item enhanced regression diagnostic plots @item formula-enabled interface to @code{stats::lowess} function @item displaying textual data in plots -@item baloon plots +@item balloon plots @item plotting \"Venn\" diagrams @item displaying Open-Office style plots @item plotting multiple data on same region, with separate axes @@ -5028,14 +5042,14 @@ VGLMs can be loosely thought of as multivariate generalised linear models.") (define-public r-pbapply (package (name "r-pbapply") - (version "1.4-1") + (version "1.4-2") (source (origin (method url-fetch) (uri (cran-uri "pbapply" version)) (sha256 (base32 - "1bbws9n90cqnnp5k58hp852jwmm6513jnhn4vzhl9f8x314k6qxk")))) + "1xmk4p006v8gij26rs6kp5prjyf2n32nqjxiyp8a6kvgyc4z46dc")))) (build-system r-build-system) (home-page "https://github.com/psolymos/pbapply") (synopsis "Adding progress bar to apply functions") |