diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 122 |
1 files changed, 121 insertions, 1 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index f854a44d96..0c0464c2b9 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -24,6 +24,7 @@ #:use-module (guix utils) #:use-module (guix build-system gnu) #:use-module (guix build-system r) + #:use-module (guix build-system python) #:use-module (gnu packages) #:use-module (gnu packages compression) #:use-module (gnu packages gcc) @@ -35,11 +36,14 @@ #:use-module (gnu packages pcre) #:use-module (gnu packages perl) #:use-module (gnu packages pkg-config) + #:use-module (gnu packages python) #:use-module (gnu packages readline) #:use-module (gnu packages texlive) #:use-module (gnu packages texinfo) #:use-module (gnu packages base) - #:use-module (gnu packages xorg)) + #:use-module (gnu packages xorg) + #:use-module (gnu packages zip) + #:use-module (srfi srfi-1)) (define-public r (package @@ -933,3 +937,119 @@ times.") large data (e.g. 100GB in RAM), fast ordered joins, fast add/modify/delete of columns by group, column listing and fast file reading.") (license license:gpl2+))) + +(define-public python-patsy + (package + (name "python-patsy") + (version "0.4.0") + (source (origin + (method url-fetch) + (uri (string-append "https://pypi.python.org/packages/source/" + "p/patsy/patsy-" version ".zip")) + (sha256 + (base32 + "1kbs996xc2haxalmhd19rr1wh5fa4gbbxf81czkf5w4kam7h7wz4")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check (lambda _ (zero? (system* "nosetests" "-v")))) + (add-after 'unpack 'prevent-generation-of-egg-archive + (lambda _ + (substitute* "setup.py" + (("from setuptools import setup") + "from distutils.core import setup")) + #t))))) + (propagated-inputs + `(("python-numpy" ,python-numpy) + ("python-scipy" ,python-scipy) + ("python-six" ,python-six))) + (native-inputs + `(("python-nose" ,python-nose) + ("unzip" ,unzip))) + (home-page "https://github.com/pydata/patsy") + (synopsis "Describe statistical models and build design matrices") + (description + "Patsy is a Python package for describing statistical models and for +building design matrices.") + ;; The majority of the code is distributed under BSD-2. The module + ;; patsy.compat contains code derived from the Python standard library, + ;; and is covered by the PSFL. + (license (list license:bsd-2 license:psfl)))) + +(define-public python2-patsy + (let ((patsy (package-with-python2 python-patsy))) + (package (inherit patsy) + (native-inputs + `(("python2-setuptools" ,python2-setuptools) + ,@(package-native-inputs patsy))) + (propagated-inputs + `(("python2-numpy" ,python2-numpy) + ("python2-scipy" ,python2-scipy) + ,@(alist-delete "python-numpy" + (alist-delete "python-scipy" + (package-propagated-inputs patsy)))))))) + +(define-public python-statsmodels + (package + (name "python-statsmodels") + (version "0.6.1") + (source + (origin + (method url-fetch) + (uri (string-append "https://pypi.python.org/packages/source/" + "s/statsmodels/statsmodels-" version ".tar.gz")) + (sha256 + (base32 + "0xn67sqr0cc1lmlhzm71352hrb4hw7g318p5ff5q97pc98vl8kmy")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + ;; tests must be run after installation + (delete 'check) + (add-after 'unpack 'set-matplotlib-backend-to-agg + (lambda _ + ;; Set the matplotlib backend to Agg to avoid problems using the + ;; GTK backend without a display. + (substitute* (find-files "statsmodels/graphics/tests" "\\.py") + (("import matplotlib\\.pyplot as plt" line) + (string-append "import matplotlib;matplotlib.use('Agg');" + line))) + #t)) + (add-after 'install 'check + (lambda _ + (with-directory-excursion "/tmp" + (zero? (system* "nosetests" + "--stop" + "-v" "statsmodels")))))))) + (propagated-inputs + `(("python-numpy" ,python-numpy) + ("python-scipy" ,python-scipy) + ("python-pandas" ,python-pandas) + ("python-patsy" ,python-patsy) + ("python-matplotlib" ,python-matplotlib))) + (native-inputs + `(("python-cython" ,python-cython) + ("python-nose" ,python-nose) + ("python-sphinx" ,python-sphinx))) + (home-page "http://statsmodels.sourceforge.net/") + (synopsis "Statistical modeling and econometrics in Python") + (description + "Statsmodels is a Python package that provides a complement to scipy for +statistical computations including descriptive statistics and estimation and +inference for statistical models.") + (license license:bsd-3))) + +(define-public python2-statsmodels + (let ((stats (package-with-python2 python-statsmodels))) + (package (inherit stats) + (propagated-inputs + `(("python2-numpy" ,python2-numpy) + ("python2-scipy" ,python2-scipy) + ("python2-pandas" ,python2-pandas) + ("python2-patsy" ,python2-patsy) + ("python2-matplotlib" ,python2-matplotlib))) + (native-inputs + `(("python2-setuptools" ,python2-setuptools) + ,@(package-native-inputs stats)))))) |