diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 343 |
1 files changed, 194 insertions, 149 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 86646fcfe3..b81bb42073 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -106,7 +106,7 @@ be output in text, PostScript, PDF or HTML.") (define-public r-minimal (package (name "r-minimal") - (version "3.3.3") + (version "3.4.0") (source (origin (method url-fetch) (uri (string-append "mirror://cran/src/base/R-" @@ -114,7 +114,7 @@ be output in text, PostScript, PDF or HTML.") version ".tar.gz")) (sha256 (base32 - "0v7wpj89b0i3ad3fi1wak5c93hywmbxv8sdnixhq8l17782nidss")))) + "14cb8bwi3akvdb6934kqic2862f2qgav6cq4g0h7gi2p4ka9x3i8")))) (build-system gnu-build-system) (arguments `(#:disallowed-references (,tzdata-2017a) @@ -184,13 +184,15 @@ be output in text, PostScript, PDF or HTML.") ;; making "help()" print nothing at all. (lambda _ (setenv "PAGER" "cat") #t)) (add-before 'check 'set-timezone - ;; Some tests require the timezone to be set. - (lambda* (#:key inputs #:allow-other-keys) - (setenv "TZ" "UTC") - (setenv "TZDIR" - (string-append (assoc-ref inputs "tzdata") - "/share/zoneinfo")) - #t)) + ;; Some tests require the timezone to be set. However, the + ;; timezone may not just be "UTC", or else a brittle regression + ;; test in reg-tests-1d will fail. + (lambda* (#:key inputs #:allow-other-keys) + (setenv "TZ" "UTC+1") + (setenv "TZDIR" + (string-append (assoc-ref inputs "tzdata") + "/share/zoneinfo")) + #t)) (add-after 'build 'make-info (lambda _ (zero? (system* "make" "info")))) (add-after 'build 'install-info @@ -262,14 +264,14 @@ available, greatly increasing its breadth and scope.") (define-public r-boot (package (name "r-boot") - (version "1.3-18") + (version "1.3-19") (source (origin (method url-fetch) (uri (cran-uri "boot" version)) (sha256 (base32 - "0pi348vvgzn1ny54yxhw6kq6nl7rx9bpr9ji1a6wqs8ah5zj7z8j")))) + "16hsw4bw9pkfc2lqxfwycm1sbvbrm4linvm0ci71n8sxc7srvkis")))) (build-system r-build-system) (home-page "http://cran.r-project.org/web/packages/boot") (synopsis "Bootstrap functions for R") @@ -283,14 +285,14 @@ D.V. Hinkley (1997, CUP), originally written by Angelo Canty for S.") (define-public r-mass (package (name "r-mass") - (version "7.3-45") + (version "7.3-47") (source (origin (method url-fetch) (uri (cran-uri "MASS" version)) (sha256 (base32 - "13lp5919h2bnpmf8rbmkar8a41yx62fnx66pkvljvqf60wa29qsx")))) + "1gy6z7ly9wn86rfn9xrmqiqq1ijw3pkasrr2299kbzsgx2mwsi7d")))) (properties `((upstream-name . "MASS"))) (build-system r-build-system) (home-page "http://www.stats.ox.ac.uk/pub/MASS4/") @@ -406,13 +408,13 @@ estimation) corresponding to the book: Wand, M.P. and Jones, M.C. (1995) (define-public r-lattice (package (name "r-lattice") - (version "0.20-34") + (version "0.20-35") (source (origin (method url-fetch) (uri (cran-uri "lattice" version)) (sha256 (base32 - "0615h69czr73k47whhzimf1qxv5qk0cabcrkljwhyrn6m6piq6ja")))) + "0pcnmaz3lr62ly0dcy5hnnqxshc4yqd43hrvlz3almgc9l7sna88")))) (build-system r-build-system) (home-page "http://lattice.r-forge.r-project.org/") (synopsis "High-level data visualization system") @@ -426,14 +428,14 @@ also flexible enough to handle most nonstandard requirements.") (define-public r-matrix (package (name "r-matrix") - (version "1.2-7.1") + (version "1.2-8") (source (origin (method url-fetch) (uri (cran-uri "Matrix" version)) (sha256 (base32 - "09rd51na9spz0lm1lylkfhw43w7c922b83m4jsggmpg3pbd6dssa")))) + "1dyv42d7ranb85y8hvi57hbg5xnvhdzqn56wcq3qmhazqj3s3liw")))) (properties `((upstream-name . "Matrix"))) (build-system r-build-system) (propagated-inputs @@ -471,14 +473,14 @@ nonlinear mixed-effects models.") (define-public r-mgcv (package (name "r-mgcv") - (version "1.8-16") + (version "1.8-17") (source (origin (method url-fetch) (uri (cran-uri "mgcv" version)) (sha256 (base32 - "0pj31gdwra7nv8spys4pfcbmsik99q1y1d0d2g37ywc3sz5s0rlj")))) + "1zj223l4a3j15d3c01wv7dkzn9w6084gxrq5600ck9rvr0lfpwwg")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix) @@ -514,14 +516,14 @@ single hidden layer, and for multinomial log-linear models.") (define-public r-rpart (package (name "r-rpart") - (version "4.1-10") + (version "4.1-11") (source (origin (method url-fetch) (uri (cran-uri "rpart" version)) (sha256 (base32 - "119dvh2cpab4vq9blvbkil5hgq6w018amiwlda3ii0fki39axpf5")))) + "165djqj7lk81jr7z5fwccq3h7ayys26hx1kj9hndvg2rkyaq1arq")))) (build-system r-build-system) (home-page "http://cran.r-project.org/web/packages/rpart") (synopsis "Recursive partitioning and regression trees") @@ -553,14 +555,14 @@ analysis.") (define-public r-survival (package (name "r-survival") - (version "2.40-1") + (version "2.41-3") (source (origin (method url-fetch) (uri (cran-uri "survival" version)) (sha256 (base32 - "10pf0kq0g66k5rgizrvh29mq3r84acljw2jgrv5yp6z38xw23mci")))) + "07cnr0hnki6ybbjll54l4s5lllhk19vni5f8m0mvsfp99ls7qygk")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix))) @@ -684,13 +686,13 @@ effects of different types of color-blindness.") (define-public r-digest (package (name "r-digest") - (version "0.6.10") + (version "0.6.12") (source (origin (method url-fetch) (uri (cran-uri "digest" version)) (sha256 - (base32 "07825781nl85gx3pqskc04ywgs0f874qj9z2nyrwz7h0aqks0l8c")))) + (base32 "1awy9phxdvqnadby7rvwy2hkbrj210bqf4xvi27asdq028zlcyd4")))) (build-system r-build-system) ;; Vignettes require r-knitr, which requires r-digest, so we have to ;; disable them and the tests. @@ -814,13 +816,13 @@ Munsell colour system.") (define-public r-rcpp (package (name "r-rcpp") - (version "0.12.8") + (version "0.12.10") (source (origin (method url-fetch) (uri (cran-uri "Rcpp" version)) (sha256 - (base32 "0is1vql1q82g7yakad4skx707ip0fx3rgdwv9a8mi8259gly2qji")))) + (base32 "108p485agxwgmnl9p54vsyy94w96lcimlk08v71ddm77gfl13y2f")))) (build-system r-build-system) (home-page "http://www.rcpp.org") (synopsis "Seamless R and C++ Integration") @@ -943,14 +945,14 @@ solution for sending email, including attachments, from within R.") (define-public r-stringi (package (name "r-stringi") - (version "1.1.2") + (version "1.1.5") (source (origin (method url-fetch) (uri (cran-uri "stringi" version)) (sha256 (base32 - "13i1p6j8mx31hsw2s4c2phm2llrrdakzixkm6i0axsxprri722z5")))) + "1wh20is24lmzhcd9487ckv7r19009fyz4is3ianp3ky69vy8a7k5")))) (build-system r-build-system) (inputs `(("icu4c" ,icu4c))) (native-inputs `(("pkg-config" ,pkg-config))) @@ -969,13 +971,13 @@ transliteration, concatenation, date-time formatting and parsing, etc.") (define-public r-stringr (package (name "r-stringr") - (version "1.1.0") + (version "1.2.0") (source (origin (method url-fetch) (uri (cran-uri "stringr" version)) (sha256 - (base32 "0css5j4psl80br75chg6s1s3ipzf89f71bnbys34flp9yghg1cfc")))) + (base32 "16hj2rmv8x03lp6cp2jk0k2plibvbggf444kp05przdvd03v7l31")))) (build-system r-build-system) (propagated-inputs `(("r-magrittr" ,r-magrittr) @@ -1073,14 +1075,14 @@ aesthetic attributes.") (define-public r-gdtools (package (name "r-gdtools") - (version "0.1.3") + (version "0.1.4") (source (origin (method url-fetch) (uri (cran-uri "gdtools" version)) (sha256 (base32 - "1prh814lw3qkgnf0760cvpic1k68jhlkpcxlksv8chjkvsrnnf09")))) + "0l8c4bh6765x9s6rw3mfm1bgicdzdngir1kxh9pxx4sidrdndcip")))) (build-system r-build-system) (native-inputs `(("r-rcpp" ,r-rcpp) @@ -1124,13 +1126,13 @@ considerably faster, produces smaller files, and leaves text as is.") (define-public r-assertthat (package (name "r-assertthat") - (version "0.1") + (version "0.2.0") (source (origin (method url-fetch) (uri (cran-uri "assertthat" version)) (sha256 (base32 - "0dwsqajyglfscqilj843qfqn1ndbqpswa7b4l1d633qjk9d68qqk")))) + "1wp5znk3xy338x6hknppk702jn596yr735d9i7c3wabm3sdzfgnp")))) (build-system r-build-system) (home-page "https://github.com/hadley/assertthat") (synopsis "Easy pre and post assertions") @@ -1162,13 +1164,13 @@ evaluation (NSE) in R.") (define-public r-dbi (package (name "r-dbi") - (version "0.5-1") + (version "0.6-1") (source (origin (method url-fetch) (uri (cran-uri "DBI" version)) (sha256 (base32 - "1idwm9lkmz6ns6h0vvgml18mg0k7vjqiv9p5svrdcmx7r1rirpdi")))) + "1fg158k4n6l3rzx9nrwhp4nwkwpbmv1q7z2xz5rw138zws68fkgr")))) (build-system r-build-system) (home-page "https://github.com/rstats-db/DBI") (synopsis "R database interface") @@ -1279,13 +1281,13 @@ data derived from /etc/mime.types in UNIX-type systems.") (define-public r-markdown (package (name "r-markdown") - (version "0.7.7") + (version "0.8") (source (origin (method url-fetch) (uri (cran-uri "markdown" version)) (sha256 (base32 - "00j1hlib3il50azs2vlcyhi0bjpx1r50mxr9w9dl5g1bwjjc71hb")))) + "1vcgsh2m2f5kfgappgg71nbf04ff0j1sbk668krjs3r2n89dk3sk")))) (build-system r-build-system) ;; Skip check phase because the tests require the r-knitr package to be ;; installed. This prevents installation failures. Knitr normally @@ -1417,13 +1419,13 @@ understand the language at a deeper level.") (define-public r-memoise (package (name "r-memoise") - (version "1.0.0") + (version "1.1.0") (source (origin (method url-fetch) (uri (cran-uri "memoise" version)) (sha256 (base32 - "0sq2dhpvxy17v1baj256r0jnygdy3m5a8x4zh6vhv29957qnq6zx")))) + "034qfc2xlh30x1q2vya239w34a3ir3y2fwnx2agbgbi6592zjxmj")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest))) @@ -1525,18 +1527,17 @@ defined in different packages.") (define-public r-tibble (package (name "r-tibble") - (version "1.2") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "tibble" version)) (sha256 (base32 - "011i352ylq9b4xfcj7h10h7qsqd9qkc1rzc0pr1gf8qjb788p2pd")))) + "1q25i1cv3qms6d3lw7jd3z142w188znkcbyam460gn9si8l8g2bk")))) (build-system r-build-system) (propagated-inputs - `(("r-assertthat" ,r-assertthat) - ("r-lazyeval" ,r-lazyeval) + `(("r-lazyeval" ,r-lazyeval) ("r-rcpp" ,r-rcpp))) (home-page "https://github.com/hadley/tibble") (synopsis "Simple data frames") @@ -1602,14 +1603,14 @@ transformations.") (define-public r-cluster (package (name "r-cluster") - (version "2.0.5") + (version "2.0.6") (source (origin (method url-fetch) (uri (cran-uri "cluster" version)) (sha256 (base32 - "1bkvqmv8h2c423q9ag2afb6s9j2vcdlxsf559zzbimraphrr2c2b")))) + "1z4gbz7chxxi4ly6c0yjlikwgf8aa8dlg05cn5cd6pjr21zvh97l")))) (build-system r-build-system) (inputs `(("gfortran" ,gfortran))) @@ -1687,13 +1688,13 @@ and density estimation.") (define-public r-chron (package (name "r-chron") - (version "2.3-48") + (version "2.3-50") (source (origin (method url-fetch) (uri (cran-uri "chron" version)) (sha256 (base32 - "1q1d0p2wq19w3mpfqnrg8nmspxqmhv4ap52r393s6y3abl36ccac")))) + "1w3sl60gsirniqslb3pa75caiqbzbvc44phpd4czvwkb62xx1vx9")))) (build-system r-build-system) (home-page "http://cran.r-project.org/web/packages/chron") (synopsis "Chronological R objects which can handle dates and times") @@ -1705,13 +1706,13 @@ times.") (define-public r-data-table (package (name "r-data-table") - (version "1.10.0") + (version "1.10.4") (source (origin (method url-fetch) (uri (cran-uri "data.table" version)) (sha256 (base32 - "1168arn4wjd1jj7kgr4sb8xd52hr8p8iqp85g5jwp3mkz4p76qfg")))) + "0ykbjr1x50ajxbri385vi3mnxj7zg1dcgh9y0snp341qmmmdypw6")))) (build-system r-build-system) (home-page "https://github.com/Rdatatable/data.table/wiki") (synopsis "Enhanced version of data.frame R object") @@ -1867,14 +1868,14 @@ chain.") (define-public r-ade4 (package (name "r-ade4") - (version "1.7-5") + (version "1.7-6") (source (origin (method url-fetch) (uri (cran-uri "ade4" version)) (sha256 (base32 - "0aaqbnydm5fb37nrvqj4bx6hxax7255j426cwh2lh88nyvznbq37")))) + "0lnc37d6waajmagy8qvw206pyc4vgrpzl3hk3j9frh6wa0b8x140")))) (build-system r-build-system) (home-page "http://pbil.univ-lyon1.fr/ADE-4") (synopsis "Multivariate data analysis and graphical display") @@ -1886,14 +1887,14 @@ and environmental data in the framework of Euclidean exploratory methods.") (define-public r-xml2 (package (name "r-xml2") - (version "1.0.0") + (version "1.1.1") (source (origin (method url-fetch) (uri (cran-uri "xml2" version)) (sha256 (base32 - "0f2alsrk3yykznbhnz4pcsg9mb72cv607vbapqx5kqfv39772kgr")))) + "05iifrcgzx53w5ciw8bbm4vdwc3giv4xsvazv8chqxkndfvf7wq0")))) (build-system r-build-system) (inputs `(("libxml2" ,libxml2))) @@ -1910,14 +1911,14 @@ files in R. It is built on top of the libxml2 C library.") (define-public r-multitaper (package (name "r-multitaper") - (version "1.0-12") + (version "1.0-13") (source (origin (method url-fetch) (uri (cran-uri "multitaper" version)) (sha256 (base32 - "011qpkwpjclfc24y2qqigmdnikqwdnanflfhihigh5b5k7qwgm5j")))) + "1ckf9bhvd5k7ypaw2viqh3cyj9jij0ygcp4q9pxwqs508s6yx3a5")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) @@ -1976,14 +1977,14 @@ limited to R.") (define-public r-backports (package (name "r-backports") - (version "1.0.4") + (version "1.0.5") (source (origin (method url-fetch) (uri (cran-uri "backports" version)) (sha256 (base32 - "0fssh5rnnvpp8wm0ml9gk765idwrgj07xyxpkhpidl9zwydxzif2")))) + "1pn1ii8vbkgxcqvx52kzsbwf9gkn9fp33388087zky2hmdzdirn0")))) (build-system r-build-system) (home-page "http://cran.r-project.org/web/packages/backports") (synopsis "Reimplementations of functions introduced since R 3.0.0") @@ -2021,14 +2022,14 @@ worries about execution time overhead.") (define-public r-bbmisc (package (name "r-bbmisc") - (version "1.10") + (version "1.11") (source (origin (method url-fetch) (uri (cran-uri "BBmisc" version)) (sha256 (base32 - "0cw2mhw7qhdrx91zzd5iwyh7ch9fy4wxga8j63731q6sxr1airjl")))) + "1lh1n4bvxzivb5rbz69mvd8xdgr3gr2bnqd68a39sd1530l8r90y")))) (properties `((upstream-name . "BBmisc"))) (build-system r-build-system) (propagated-inputs @@ -2112,23 +2113,76 @@ code for report generation. The template syntax is similar to PHP, Ruby's erb module, Java Server Pages, and Python's psp module.") (license license:gpl2+))) +(define-public r-desc + (package + (name "r-desc") + (version "1.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "desc" version)) + (sha256 + (base32 + "0mc1jmiwqyj7s6gzxz6fyamzjpmdn3rpfpllby2fq11ml30c6jpr")))) + (build-system r-build-system) + (propagated-inputs + `(("r-assertthat" ,r-assertthat) + ("r-crayon" ,r-crayon) + ("r-r6" ,r-r6) + ("r-rprojroot" ,r-rprojroot))) + (home-page "https://github.com/r-pkgs/desc") + (synopsis "Manipulate DESCRIPTION Files") + (description + "This package provides tools to read, write, create, and manipulate +DESCRIPTION files. It is intended for packages that create or manipulate +other packages.") + (license license:expat))) + +(define-public r-commonmark + (package + (name "r-commonmark") + (version "1.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "commonmark" version)) + (sha256 + (base32 + "12q5mncxvkwdxc35is6y5idx8a1h99hyz5x6ri0arni6k25krchk")))) + (build-system r-build-system) + ;;(inputs `(("zlib" ,zlib))) + (home-page "http://cran.r-project.org/web/packages/commonmark") + (synopsis "CommonMark and Github Markdown Rendering in R") + (description + "The CommonMark specification defines a rationalized version of markdown +syntax. This package uses the 'cmark' reference implementation for converting +markdown text into various formats including HTML, LaTeX and groff man. In +addition, it exposes the markdown parse tree in XML format. The latest +version of this package also adds support for Github extensions including +tables, autolinks and strikethrough text.") + (license license:bsd-2))) + (define-public r-roxygen2 (package (name "r-roxygen2") - (version "5.0.1") + (version "6.0.1") (source (origin (method url-fetch) (uri (cran-uri "roxygen2" version)) (sha256 (base32 - "19gblyrrn29msbpawcb1hn5m1rshiqwxy0lby0vf92rm13fmsxcz")))) + "0xpzziminf225kjwhyl51kgkzhplyzhk5farhf5s822krl2xqbfj")))) (build-system r-build-system) (propagated-inputs `(("r-brew" ,r-brew) + ("r-commonmark" ,r-commonmark) + ("r-desc" ,r-desc) ("r-digest" ,r-digest) + ("r-r6" ,r-r6) ("r-rcpp" ,r-rcpp) ("r-stringi" ,r-stringi) - ("r-stringr" ,r-stringr))) + ("r-stringr" ,r-stringr) + ("r-xml2" ,r-xml2))) (home-page "https://github.com/klutometis/roxygen") (synopsis "In-source documentation system for R") (description @@ -2308,17 +2362,16 @@ time-of-day values, based on the @code{difftime} class.") (define-public r-readr (package (name "r-readr") - (version "1.0.0") + (version "1.1.0") (source (origin (method url-fetch) (uri (cran-uri "readr" version)) (sha256 (base32 - "0xji0dbal6xcxnsmjj678fw29n7wrj45wrd5ng99yhqqijcm9f6g")))) + "1g7g3gdmvq7nj8asw6fi13k38c420sy9696nqgkrhlvv5h13yqs7")))) (build-system r-build-system) (propagated-inputs - `(("r-curl" ,r-curl) - ("r-rcpp" ,r-rcpp) + `(("r-rcpp" ,r-rcpp) ("r-hms" ,r-hms) ("r-tibble" ,r-tibble) ("r-r6" ,r-r6) @@ -2392,32 +2445,17 @@ well as additional utilities such as panel and axis annotation functions.") (define-public r-rcpparmadillo (package (name "r-rcpparmadillo") - (version "0.7.600.1.0") + (version "0.7.800.2.0") (source (origin (method url-fetch) (uri (cran-uri "RcppArmadillo" version)) (sha256 (base32 - "0k1wniip184j0ckcg9kcjy2q4mcfj5jpd1nkk4l0ab75ad8znywv")) - (modules '((guix build utils))) - ;; Remove bundled armadillo sources - (snippet - '(begin - (delete-file-recursively "inst/include/armadillo_bits") - (delete-file "inst/include/armadillo"))))) + "025lh504nw7ir1f2xsqnvfkq9rg0rb2xzfn3a2s0b2a9snqdzzwr")))) (properties `((upstream-name . "RcppArmadillo"))) (build-system r-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'link-against-armadillo - (lambda _ - (substitute* "src/Makevars" - (("PKG_LIBS=" prefix) - (string-append prefix "-larmadillo")))))))) (propagated-inputs - `(("r-rcpp" ,r-rcpp) - ("armadillo" ,armadillo-for-rcpparmadillo))) + `(("r-rcpp" ,r-rcpp))) (home-page "https://github.com/RcppCore/RcppArmadillo") (synopsis "Rcpp integration for the Armadillo linear algebra library") (description @@ -2476,14 +2514,14 @@ encoder/decoder, round-off-error-free sum and cumsum, etc.") (define-public r-rprojroot (package (name "r-rprojroot") - (version "1.1") + (version "1.2") (source (origin (method url-fetch) (uri (cran-uri "rprojroot" version)) (sha256 (base32 - "04ywfpar4d2hyi4rh4fbixrbzd665gpa2jhx67g8857cr70pp0nh")))) + "1fgyxv1zv04sllcclzz089xl6hpdzac7xk61l0l4acb7rqsx5d18")))) (build-system r-build-system) (propagated-inputs `(("r-backports" ,r-backports))) @@ -2499,14 +2537,14 @@ certain criterion, e.g., it contains a certain regular file.") (define-public r-rmarkdown (package (name "r-rmarkdown") - (version "1.3") + (version "1.4") (source (origin (method url-fetch) (uri (cran-uri "rmarkdown" version)) (sha256 (base32 - "1vvxyf3zhyxx6k697lia299456hryp8nh3zr0fc27f3107a8mcjf")))) + "1dvs9cq88g61wfimifagq6y98yxavxzjan39jvpdsg98mafckq9g")))) (properties `((upstream-name . "rmarkdown"))) (build-system r-build-system) (propagated-inputs @@ -2592,13 +2630,13 @@ error stream.") (define-public r-rsqlite (package (name "r-rsqlite") - (version "1.1-1") + (version "1.1-2") (source (origin (method url-fetch) (uri (cran-uri "RSQLite" version)) (sha256 (base32 - "11vnzds5gidgakdmsbdn0bvnsz064ym1savwb7l6gc1bjn7xa2k4")))) + "0mg9yhdvny3vjn72agai5ghqxd3vk8cd4x1lsc0gzc2b2dm2w0p4")))) (properties `((upstream-name . "RSQLite"))) (build-system r-build-system) (propagated-inputs @@ -2649,13 +2687,13 @@ ldap, and also supports cookies, redirects, authentication, etc.") (define-public r-xml (package (name "r-xml") - (version "3.98-1.5") + (version "3.98-1.6") (source (origin (method url-fetch) (uri (cran-uri "XML" version)) (sha256 (base32 - "0dcdj7ryn8lm7wmv4hqhh9jxa5k97l6ad8xyvb932yfkwj1g1byy")))) + "1amxx7fpik162nimrr7m5lvv6rhx9cwdyg44fxp1i5wm3y4skwnz")))) (properties `((upstream-name . "XML"))) (build-system r-build-system) @@ -2808,13 +2846,13 @@ worker processes and collect and return the results on the master.") (define-public r-sparsem (package (name "r-sparsem") - (version "1.74") + (version "1.76") (source (origin (method url-fetch) (uri (cran-uri "SparseM" version)) (sha256 (base32 - "1fpfhld887y5lyb8jydprmv5krqm1fk6n53z942b4g4z1v4g04j7")))) + "16xnl9cacim35aawq6bmd2y6rrhnh1kg6dwsy3k5yslkfr1y9j62")))) (properties `((upstream-name . "SparseM"))) (inputs @@ -3115,14 +3153,14 @@ the way current RNG settings can be changed.") (define-public r-rtsne (package (name "r-rtsne") - (version "0.11") + (version "0.13") (source (origin (method url-fetch) (uri (cran-uri "Rtsne" version)) (sha256 (base32 - "0zi4nxgpiv1gpdmcnqdhz5kymzp8m5xj02zpf290p1yyydl76bhy")))) + "17crbdi80q4g2pwp9v7j3bdaznk96qlrqx01zvj3wwqippizyfqw")))) (properties `((upstream-name . "Rtsne"))) (build-system r-build-system) (propagated-inputs @@ -3139,14 +3177,14 @@ Stochastic Neighbor Embedding using a Barnes-Hut implementation.") (define-public r-e1071 (package (name "r-e1071") - (version "1.6-7") + (version "1.6-8") (source (origin (method url-fetch) (uri (cran-uri "e1071" version)) (sha256 (base32 - "1069qwj9gsjq6par2cgfah8nn5x2w38830761x1f7mqpmk0gnj3h")))) + "08n6i26nfckjpxjkzi8phhanc3ahsrirkv5rz38y2jcv7ds031pn")))) (build-system r-build-system) (propagated-inputs `(("r-class" ,r-class))) @@ -3395,13 +3433,13 @@ persistent (on the file system).") (define-public r-r-rsp (package (name "r-r-rsp") - (version "0.40.0") + (version "0.41.0") (source (origin (method url-fetch) (uri (cran-uri "R.rsp" version)) (sha256 (base32 - "1hz5fnxz30m3cc7x7ha1swx4pn8c2244z6ka6v9m3l5lpdgc1367")))) + "01l430avj5ggmdsla2kiriix72g0dlzx9klniq321bs0za808v3c")))) (properties `((upstream-name . "R.rsp"))) (build-system r-build-system) (propagated-inputs @@ -3426,13 +3464,13 @@ vignettes.") (define-public r-mvtnorm (package (name "r-mvtnorm") - (version "1.0-5") + (version "1.0-6") (source (origin (method url-fetch) (uri (cran-uri "mvtnorm" version)) (sha256 (base32 - "1pc1mi2h063gh4a40009xk5j6pf5bm4274i5kycln38dixsry3yh")))) + "0i74s9dl4jf1gln6agra8h38qn9ifd5v0gi13caj1da5nrbmn0aa")))) (build-system r-build-system) (inputs `(("gfortran" ,gfortran))) @@ -3445,13 +3483,13 @@ t-probabilities, quantiles, random deviates and densities.") (define-public r-matrixstats (package (name "r-matrixstats") - (version "0.51.0") + (version "0.52.2") (source (origin (method url-fetch) (uri (cran-uri "matrixStats" version)) (sha256 (base32 - "0bsalx605kgb9nl7mfnq1qinkyd9s97p8plymsyfja1gmcnjrcpj")))) + "19fjf19cr0p3j9pj17myz39zpi5bh7ci72db3la9my09n6k6mnir")))) (properties `((upstream-name . "matrixStats"))) (build-system r-build-system) (native-inputs @@ -3469,17 +3507,18 @@ memory usage.") (define-public r-viridis (package (name "r-viridis") - (version "0.3.4") + (version "0.4.0") (source (origin (method url-fetch) (uri (cran-uri "viridis" version)) (sha256 (base32 - "1a9hqn2pccpc51vh8ghw698ni6xzdnp8v0n8kgjh51nlz5hhc87j")))) + "03mha2935k1mw7mjjkq7mrx185hl0m3vq3967iiwbknpivbdxllk")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) - ("r-gridextra" ,r-gridextra))) + ("r-gridextra" ,r-gridextra) + ("r-viridislite" ,r-viridislite))) (home-page "https://github.com/sjmgarnier/viridis") (synopsis "Matplotlib default color map") (description @@ -3495,14 +3534,14 @@ most common form of color blindness.") (define-public r-viridislite (package (name "r-viridislite") - (version "0.1.3") + (version "0.2.0") (source (origin (method url-fetch) (uri (cran-uri "viridisLite" version)) (sha256 (base32 - "1b0fhj8i1m9jsz91gzag60k7vy7kk5xkdg31rc3h3spq96l66psp")))) + "1546h44ng4dxs130jkh6lkh990hmp90m1w45sq5p47n546gr0k9d")))) (properties `((upstream-name . "viridisLite"))) (build-system r-build-system) (home-page "https://github.com/sjmgarnier/viridisLite") @@ -3520,21 +3559,22 @@ the 'lite' version of the more complete @code{viridis} package.") (define-public r-tidyr (package (name "r-tidyr") - (version "0.6.0") + (version "0.6.1") (source (origin (method url-fetch) (uri (cran-uri "tidyr" version)) (sha256 (base32 - "1bpwbphgl43ym433b0nrshwhr7pprmj1wkpkamdzix1zvf9dcbc2")))) + "11hs3gqpbaw3w281as4m7j9n594ix5axfpwbyjsd0l62pwnzj217")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) ("r-lazyeval" ,r-lazyeval) ("r-magrittr" ,r-magrittr) ("r-rcpp" ,r-rcpp) - ("r-stringi" ,r-stringi))) + ("r-stringi" ,r-stringi) + ("r-tibble" ,r-tibble))) (home-page "https://github.com/hadley/tidyr") (synopsis "Tidy data with `spread()` and `gather()` functions") (description @@ -3891,14 +3931,14 @@ hierarchical clustering dendrograms.") (define-public r-preprocesscore (package (name "r-preprocesscore") - (version "1.36.0") + (version "1.38.0") (source (origin (method url-fetch) (uri (bioconductor-uri "preprocessCore" version)) (sha256 (base32 - "1n8y12q7145f385gm2k3c6y3vwvin7jlb47la4mnl7mar6pq9kmp")))) + "1vq8hwxz73j93q0ldw5bnhbas1f2ha5q1lr9pp4l8gp8zdwzfrjn")))) (properties `((upstream-name . "preprocessCore"))) (build-system r-build-system) @@ -4112,13 +4152,13 @@ estimation) corresponding to the book: Wand, M.P. and Jones, M.C. (1995) (define-public r-zoo (package (name "r-zoo") - (version "1.7-14") + (version "1.8-0") (source (origin (method url-fetch) (uri (cran-uri "zoo" version)) (sha256 (base32 - "167m142rwwfy8b9hnfc3fi28dcsdjk61g1crqhll6sh5xmgnfn28")))) + "0mqklbx92ifwa0awm7gpm4r9dvwa09p55zjxjnypiqsxy532r4h9")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice))) @@ -4153,13 +4193,13 @@ with alternating row colors) in LaTeX and HTML formats easily from (define-public r-vipor (package (name "r-vipor") - (version "0.4.4") + (version "0.4.5") (source (origin (method url-fetch) (uri (cran-uri "vipor" version)) (sha256 (base32 - "0p1z9a3fazl78pj8a1i2n62v8hrs8cinq82j9wpawhmfkn3dggss")))) + "112gc0d7f8iavgf56pnzfxb7hy75yhd0zlyjzshdcfbnqcd2a6bx")))) (build-system r-build-system) (home-page "http://cran.r-project.org/web/packages/vipor") (synopsis "Plot categorical data using noise and density estimates") @@ -4191,14 +4231,14 @@ closely-packed, non-overlapping points.") (define-public r-sourcetools (package (name "r-sourcetools") - (version "0.1.5") + (version "0.1.6") (source (origin (method url-fetch) (uri (cran-uri "sourcetools" version)) (sha256 (base32 - "0jx6kslygfqaic3cmjwag3dy98q1a2dw20cz7z8agsknmmbk6dy2")))) + "0l8c6fql82cb246qh7hfgxb4s35qn0qfgy6dzvkx0zkz1cpqvx69")))) (build-system r-build-system) (home-page "http://cran.r-project.org/web/packages/sourcetools") (synopsis "Tools for reading, tokenizing and parsing R code") @@ -4234,13 +4274,13 @@ data at that region, and avoids over-plotting.") (define-public r-ggthemes (package (name "r-ggthemes") - (version "3.3.0") + (version "3.4.0") (source (origin (method url-fetch) (uri (cran-uri "ggthemes" version)) (sha256 (base32 - "1qdxg2siwsiq32fmgcxn4vihgxad9v8q0aqigl7a94c26bwxs7y2")))) + "1jj8lp7jbk3489kpgbw4b5phpn01gkfmksc21c6sn3x6wmzyn6hs")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) @@ -4259,13 +4299,13 @@ Wall Street Journal, among others. This package also provides (define-public r-statmod (package (name "r-statmod") - (version "1.4.27") + (version "1.4.29") (source (origin (method url-fetch) (uri (cran-uri "statmod" version)) (sha256 (base32 - "14yilq9d3z20hig4rs8bjqyydw3dfx90mhmzvw9w8p16h0s595sn")))) + "1fgzkwriba39d7946lq892f0si2fjdy37pvxki6ix8xyj8qgnci4")))) (build-system r-build-system) (home-page "http://cran.r-project.org/web/packages/statmod") (native-inputs @@ -4333,14 +4373,14 @@ published by the statistics blog FiveThirtyEight.") (define-public r-compquadform (package (name "r-compquadform") - (version "1.4.2") + (version "1.4.3") (source (origin (method url-fetch) (uri (cran-uri "CompQuadForm" version)) (sha256 (base32 - "0bsgbdblxpv57mbwnf51xyiydp2bqyxkg4zzwqki85cv5xqlrq1n")))) + "1i30hrqdk64q17vsn918c3q79brchgx2wzh1gbsgbn0dh1ncabq4")))) (properties `((upstream-name . "CompQuadForm"))) (build-system r-build-system) (home-page "http://cran.r-project.org/web/packages/CompQuadForm") @@ -4378,19 +4418,19 @@ letters, as is often required for scientific publications.") (define-public r-mixtools (package (name "r-mixtools") - (version "1.0.4") + (version "1.1.0") (source (origin (method url-fetch) (uri (cran-uri "mixtools" version)) (sha256 (base32 - "133rr17ywmlhsc6457hs8qxi8ng443ql9ashxpwc8875gjhv1x32")))) + "13wdm0xs5bakhpa8ypg6lvhjaqkxyabwz4glxdwn0jwdvkcdhgsl")))) (build-system r-build-system) (propagated-inputs - `(("r-boot" ,r-boot) - ("r-mass" ,r-mass) - ("r-segmented" ,r-segmented))) + `(("r-mass" ,r-mass) + ("r-segmented" ,r-segmented) + ("r-survival" ,r-survival))) (home-page "http://cran.r-project.org/web/packages/mixtools") (synopsis "Tools for analyzing finite mixture models") (description @@ -4536,14 +4576,14 @@ models, generalized linear models and model-based clustering.") (define-public r-mclust (package (name "r-mclust") - (version "5.2.2") + (version "5.2.3") (source (origin (method url-fetch) (uri (cran-uri "mclust" version)) (sha256 (base32 - "19cbg7p5h2b6h9mvcx9rjppyd3awma18ymaljakbnclpvhwbqpwd")))) + "0045msdw1xndfmlylbnm1ss716iiqzqwj454a97gmcq5kph86qzz")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) @@ -4772,14 +4812,14 @@ based on an interface to Fortran implementations by M. J. D. Powell.") (define-public r-rcppeigen (package (name "r-rcppeigen") - (version "0.3.2.9.0") + (version "0.3.2.9.1") (source (origin (method url-fetch) (uri (cran-uri "RcppEigen" version)) (sha256 (base32 - "0fy9kr03160f1ywzff3p380s8a59jz7d2d0rggb14g2y0slzpbr5")))) + "1ih940yjbc530cmpl6kx1jic7pz2ps1w5vrvy32qizh6m5s3lk7x")))) (properties `((upstream-name . "RcppEigen"))) (build-system r-build-system) (propagated-inputs @@ -4841,19 +4881,20 @@ using modular prediction and response module classes.") (define-public r-quantreg (package (name "r-quantreg") - (version "5.29") + (version "5.33") (source (origin (method url-fetch) (uri (cran-uri "quantreg" version)) (sha256 (base32 - "098gy8xv9kcl5y0cm93b8chr5sm6crrdxi20bkx9lmwmybl3himv")))) + "1dirmxa4cd05nb0yv0ga6ivw5hkr2zr2cb2lixl1nb6amqn024is")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) (propagated-inputs - `(("r-matrixmodels" ,r-matrixmodels) + `(("r-matrix" ,r-matrix) + ("r-matrixmodels" ,r-matrixmodels) ("r-sparsem" ,r-sparsem))) (home-page "http://www.r-project.org") (synopsis "Quantile regression") @@ -4894,20 +4935,22 @@ algorithms.") (define-public r-lme4 (package (name "r-lme4") - (version "1.1-12") + (version "1.1-13") (source (origin (method url-fetch) (uri (cran-uri "lme4" version)) (sha256 (base32 - "0j60l5kgx1wvw2wm3jwfqwi63hammaq8gfcxzwa4h552likvaxi9")))) + "13j4a721rx0272pdxrz6nabjv56xb6srklq5w4z1abc82lyvda2z")))) (build-system r-build-system) (native-inputs `(("r-rcpp" ,r-rcpp) ("r-rcppeigen" ,r-rcppeigen))) (propagated-inputs - `(("r-minqa" ,r-minqa) + `(("r-lattice" ,r-lattice) + ("r-matrix" ,r-matrix) + ("r-minqa" ,r-minqa) ("r-nloptr" ,r-nloptr) ("r-mass" ,r-mass) ("r-nlme" ,r-nlme))) @@ -4923,14 +4966,14 @@ C++ library for numerical linear algebra and RcppEigen glue.") (define-public r-pbkrtest (package (name "r-pbkrtest") - (version "0.4-6") + (version "0.4-7") (source (origin (method url-fetch) (uri (cran-uri "pbkrtest" version)) (sha256 (base32 - "00cw18q7wvddzjrbxz917wkix6r7672vi2wmsp4gwgzady8vha4x")))) + "1si3bhi59xc51a0pgjjglccq3h4aljyhw2k1b8574s145fnh7fsw")))) (build-system r-build-system) (propagated-inputs `(("r-lme4" ,r-lme4) @@ -4972,20 +5015,22 @@ to Applied regression, Second Edition, Sage, 2011.") (define-public r-caret (package (name "r-caret") - (version "6.0-73") + (version "6.0-76") (source (origin (method url-fetch) (uri (cran-uri "caret" version)) (sha256 (base32 - "1jzaqwv4glyqqnfbpalgajd0ag866247vvdh5i83ffqs1yhs984h")))) + "1w31xzpmj8p6r6s7s1vwnjxainq54bbh4cqm177ba0myv69hh8cc")))) (build-system r-build-system) (propagated-inputs `(("r-car" ,r-car) ("r-foreach" ,r-foreach) ("r-ggplot2" ,r-ggplot2) + ("r-lattice" ,r-lattice) ("r-modelmetrics" ,r-modelmetrics) + ("r-nlme" ,r-nlme) ("r-plyr" ,r-plyr) ("r-reshape2" ,r-reshape2))) (home-page "https://github.com/topepo/caret") @@ -5114,14 +5159,14 @@ diagnostic tools (@code{ctlcurves} and @code{DiscrFact}).") (define-public r-ranger (package (name "r-ranger") - (version "0.6.0") + (version "0.7.0") (source (origin (method url-fetch) (uri (cran-uri "ranger" version)) (sha256 (base32 - "1fwqwbi0dnla16x6zj14rf95qr5gmilfmlrwnv7s960h4yiw4n97")))) + "0g1rnpk4c06lmy0r5n0j7i2xna190kqalmxp42d9gnk3drnb1x43")))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp))) |