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-rw-r--r--gnu/packages/statistics.scm333
1 files changed, 176 insertions, 157 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 99fd2e8d12..55a8a2a483 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -264,14 +264,14 @@ available, greatly increasing its breadth and scope.")
(define-public r-boot
(package
(name "r-boot")
- (version "1.3-19")
+ (version "1.3-20")
(source
(origin
(method url-fetch)
(uri (cran-uri "boot" version))
(sha256
(base32
- "16hsw4bw9pkfc2lqxfwycm1sbvbrm4linvm0ci71n8sxc7srvkis"))))
+ "0ai1qpm0p4z07xr0dvag8sdn9jrxcwanrsk9khzmww094jvr1jxd"))))
(build-system r-build-system)
(home-page "http://cran.r-project.org/web/packages/boot")
(synopsis "Bootstrap functions for R")
@@ -366,14 +366,14 @@ Hubert, based on Kaufman and Rousseeuw (1990) \"Finding Groups in Data\".")
(define-public r-foreign
(package
(name "r-foreign")
- (version "0.8-67")
+ (version "0.8-69")
(source
(origin
(method url-fetch)
(uri (cran-uri "foreign" version))
(sha256
(base32
- "0j0z815zyp8n97rk6hlk68d1r8b26vls39s03viq0pnx3cbpwyga"))))
+ "0s1lxmd85dd0kxx8hwk02w9l7pmpk4bpy7787fbyh2dbq5g9ys0k"))))
(build-system r-build-system)
(home-page "http://cran.r-project.org/web/packages/foreign")
(synopsis "Read data stored by other statistics software")
@@ -428,14 +428,14 @@ also flexible enough to handle most nonstandard requirements.")
(define-public r-matrix
(package
(name "r-matrix")
- (version "1.2-8")
+ (version "1.2-10")
(source
(origin
(method url-fetch)
(uri (cran-uri "Matrix" version))
(sha256
(base32
- "1dyv42d7ranb85y8hvi57hbg5xnvhdzqn56wcq3qmhazqj3s3liw"))))
+ "0r3qjcz92xwgdzrfz444mqzwnja5sv9abaf252fh6k48qbyahahh"))))
(properties `((upstream-name . "Matrix")))
(build-system r-build-system)
(propagated-inputs
@@ -473,14 +473,14 @@ nonlinear mixed-effects models.")
(define-public r-mgcv
(package
(name "r-mgcv")
- (version "1.8-17")
+ (version "1.8-18")
(source
(origin
(method url-fetch)
(uri (cran-uri "mgcv" version))
(sha256
(base32
- "1zj223l4a3j15d3c01wv7dkzn9w6084gxrq5600ck9rvr0lfpwwg"))))
+ "011mgcypr56xvm9nizsfsb2285kzql93x0d3lzg849g39vbpp4s2"))))
(build-system r-build-system)
(propagated-inputs
`(("r-matrix" ,r-matrix)
@@ -622,14 +622,14 @@ binary booleans, @code{TRUE} and @code{FALSE} can be stored with 1 bit only.")
(define-public r-bit64
(package
(name "r-bit64")
- (version "0.9-5")
+ (version "0.9-7")
(source
(origin
(method url-fetch)
(uri (cran-uri "bit64" version))
(sha256
(base32
- "0fz5m3fhvxgwjl76maag7yn0zdw24rx34gy6v77378fajag9yllg"))))
+ "07znvz9vp1nz1y5ljng4qyskvm943cdbmy996s67560ijxzsm6kv"))))
(build-system r-build-system)
(propagated-inputs
`(("r-bit" ,r-bit)))
@@ -793,30 +793,6 @@ see package vignette. To quote Rene Magritte, \"Ceci n'est pas un pipe.\"")
Munsell colour system.")
(license license:expat)))
-(define-public r-rcpp
- (package
- (name "r-rcpp")
- (version "0.12.10")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "Rcpp" version))
- (sha256
- (base32 "108p485agxwgmnl9p54vsyy94w96lcimlk08v71ddm77gfl13y2f"))))
- (build-system r-build-system)
- (home-page "http://www.rcpp.org")
- (synopsis "Seamless R and C++ Integration")
- (description
- "The Rcpp package provides R functions as well as C++ classes which offer
-a seamless integration of R and C++. Many R data types and objects can be
-mapped back and forth to C++ equivalents which facilitates both writing of new
-code as well as easier integration of third-party libraries. Documentation
-about Rcpp is provided by several vignettes included in this package, via the
-'Rcpp Gallery' site at <http://gallery.rcpp.org>, the paper by Eddelbuettel
-and Francois (2011, JSS), and the book by Eddelbuettel (2013, Springer); see
-'citation(\"Rcpp\")' for details on these last two.")
- (license license:gpl2+)))
-
(define-public r-permute
(package
(name "r-permute")
@@ -1144,13 +1120,13 @@ evaluation (NSE) in R.")
(define-public r-dbi
(package
(name "r-dbi")
- (version "0.6-1")
+ (version "0.7")
(source (origin
(method url-fetch)
(uri (cran-uri "DBI" version))
(sha256
(base32
- "1fg158k4n6l3rzx9nrwhp4nwkwpbmv1q7z2xz5rw138zws68fkgr"))))
+ "04fyrxdpqcygg5wviy637y6lgk64xqjjq31lvv4hwqj5kbaxamr5"))))
(build-system r-build-system)
(home-page "https://github.com/rstats-db/DBI")
(synopsis "R database interface")
@@ -1182,13 +1158,13 @@ for template use among CRAN packages.")
(define-public r-evaluate
(package
(name "r-evaluate")
- (version "0.10")
+ (version "0.10.1")
(source (origin
(method url-fetch)
(uri (cran-uri "evaluate" version))
(sha256
(base32
- "0mwna7rjyrmc76651a1fm7c76ippdsc2wsp3sj3iwb1c73mvlqv1"))))
+ "070vvmnbdlp7sz2zhza7fhd2a6mlwiln8fn4hyzhsiizbn4n79y9"))))
(build-system r-build-system)
(propagated-inputs
`(("r-stringr" ,r-stringr)))
@@ -1204,13 +1180,13 @@ adapted for other output formats, such as HTML or LaTeX.")
(define-public r-formatr
(package
(name "r-formatr")
- (version "1.4")
+ (version "1.5")
(source (origin
(method url-fetch)
(uri (cran-uri "formatR" version))
(sha256
(base32
- "1fvynq0fj1r9grg9vvfdh5fl2riv6qki9f2rfpyvbvqq3xxpmi3f"))))
+ "19sd23vgs4ac0fwlw40j3676k6mramb0ajlq8hdw23kjwdx1jk47"))))
(build-system r-build-system)
(home-page "http://yihui.name/formatR")
(synopsis "Format R code automatically")
@@ -1305,13 +1281,13 @@ emitter (http://pyyaml.org/wiki/LibYAML) for R.")
(define-public r-knitr
(package
(name "r-knitr")
- (version "1.15.1")
+ (version "1.16")
(source (origin
(method url-fetch)
(uri (cran-uri "knitr" version))
(sha256
(base32
- "1pbxd3k7kv5sa1a5gxm0zc2bhjxdgx2nfch9xap5k85djmgsfqc1"))))
+ "02balmhvc955rkqv4v0wkxbw4vjphydajgcpy4ml0s3b4sziyj0h"))))
(build-system r-build-system)
(propagated-inputs
`(("r-evaluate" ,r-evaluate)
@@ -1333,14 +1309,14 @@ generation in R using Literate Programming techniques.")
(define-public r-knitrbootstrap
(package
(name "r-knitrbootstrap")
- (version "1.0.0")
+ (version "1.0.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "knitrBootstrap" version))
(sha256
(base32
- "0pshn2slzqwpryklslsxwh1dmqcnwv6bwi7yfm6m342wjybpk0wl"))))
+ "089147g7nqp99rwdxxsfmklsrwc8aia09sr8ndmrc335r33v6r6p"))))
(properties `((upstream-name . "knitrBootstrap")))
(build-system r-build-system)
(propagated-inputs
@@ -1485,13 +1461,13 @@ flexible and easy to set up.")
(define-public r-r6
(package
(name "r-r6")
- (version "2.2.0")
+ (version "2.2.2")
(source (origin
(method url-fetch)
(uri (cran-uri "R6" version))
(sha256
(base32
- "1ir51pb0y6yj05qaxsflk4a6hv8n73cwlb0qajcskbrz632dsyvx"))))
+ "13xfdr19ca7ymisidsanm6w7hsk3qmy5l8c0mlz3nk48f7s5cxq8"))))
(build-system r-build-system)
(home-page "https://github.com/wch/R6/")
(synopsis "Classes with reference semantics in R")
@@ -1504,20 +1480,38 @@ private members, and they support inheritance, even when the classes are
defined in different packages.")
(license license:expat)))
+(define-public r-rlang
+ (package
+ (name "r-rlang")
+ (version "0.1.1")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "rlang" version))
+ (sha256
+ (base32
+ "0grwqy3zkvz96mvpwfbfyqid4jkfrqh3ldy2n6dpv2kjd1fzj0ar"))))
+ (build-system r-build-system)
+ (home-page "http://rlang.tidyverse.org")
+ (synopsis "Functions for base types, core R and Tidyverse features")
+ (description "This package provides a toolbox for working with base types,
+core R features like the condition system, and core @code{Tidyverse} features
+like tidy evaluation.")
+ (license license:gpl3)))
+
(define-public r-tibble
(package
(name "r-tibble")
- (version "1.3.0")
+ (version "1.3.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "tibble" version))
(sha256
(base32
- "1q25i1cv3qms6d3lw7jd3z142w188znkcbyam460gn9si8l8g2bk"))))
+ "1bhq4pm56l7l6s1k44ajrcr7hz56h37m9ck4zji9f8xfdqschbl0"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-lazyeval" ,r-lazyeval)
+ `(("r-rlang" ,r-rlang)
("r-rcpp" ,r-rcpp)))
(home-page "https://github.com/hadley/tibble")
(synopsis "Simple data frames")
@@ -1529,20 +1523,23 @@ and printing capabilities than traditional data frames.")
(define-public r-dplyr
(package
(name "r-dplyr")
- (version "0.5.0")
+ (version "0.7.2")
(source (origin
(method url-fetch)
(uri (cran-uri "dplyr" version))
(sha256
(base32
- "0ks5cklb03laqf5ygcw986g1lv7wk1ipvypjlha8xly2y4lvilwk"))))
+ "0jpb32ca1c0mr660igna4yw4fmzydzfhxshd0g8wgmggkynx2qi2"))))
(build-system r-build-system)
(propagated-inputs
`(("r-assertthat" ,r-assertthat)
("r-r6" ,r-r6)
("r-magrittr" ,r-magrittr)
- ("r-lazyeval" ,r-lazyeval)
- ("r-dbi" ,r-dbi)
+ ("r-rlang" ,r-rlang)
+ ("r-plogr" ,r-plogr)
+ ("r-glue" ,r-glue)
+ ("r-pkgconfig" ,r-pkgconfig)
+ ("r-bindrcpp" ,r-bindrcpp)
("r-tibble" ,r-tibble)))
(native-inputs
`(("r-rcpp" ,r-rcpp)
@@ -1605,14 +1602,14 @@ Groups in Data\".")
(define-public r-formula
(package
(name "r-formula")
- (version "1.2-1")
+ (version "1.2-2")
(source
(origin
(method url-fetch)
(uri (cran-uri "Formula" version))
(sha256
(base32
- "02in5325zzrqbhlygx6s0dinj6ymw845q70y56frqacv25ayzcax"))))
+ "0ad49bzip1zqmpj1d8jajwl4bd81fm3k6dq8p26x6mvlzc04dvwd"))))
(properties `((upstream-name . "Formula")))
(build-system r-build-system)
(home-page "http://cran.r-project.org/web/packages/Formula")
@@ -1937,14 +1934,14 @@ limited to R.")
(define-public r-backports
(package
(name "r-backports")
- (version "1.0.5")
+ (version "1.1.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "backports" version))
(sha256
(base32
- "1pn1ii8vbkgxcqvx52kzsbwf9gkn9fp33388087zky2hmdzdirn0"))))
+ "1kcz6j82by28cjk5wi2j6dfqdin1kib4y7d2r4h3zabcxmk6jly5"))))
(build-system r-build-system)
(home-page "http://cran.r-project.org/web/packages/backports")
(synopsis "Reimplementations of functions introduced since R 3.0.0")
@@ -1960,14 +1957,14 @@ R version.")
(define-public r-checkmate
(package
(name "r-checkmate")
- (version "1.8.2")
+ (version "1.8.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "checkmate" version))
(sha256
(base32
- "1zqcggl9m7slvc0q6zyhssdypb7jzf3l9byl5vxh1qdwjiw2y64g"))))
+ "04rxabzamhv6ybynx627sxk02qvq8znkv0y10vmq67xx6pxhqvla"))))
(build-system r-build-system)
(propagated-inputs
`(("r-backports" ,r-backports)))
@@ -2076,14 +2073,14 @@ module, Java Server Pages, and Python's psp module.")
(define-public r-desc
(package
(name "r-desc")
- (version "1.1.0")
+ (version "1.1.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "desc" version))
(sha256
(base32
- "0mc1jmiwqyj7s6gzxz6fyamzjpmdn3rpfpllby2fq11ml30c6jpr"))))
+ "0k07qighac1xzmm8k988zi7i88a0yfvia3gk5hbz0fyvb2v9kzrj"))))
(build-system r-build-system)
(propagated-inputs
`(("r-assertthat" ,r-assertthat)
@@ -2210,13 +2207,13 @@ functions make it easy to control additional request components.")
(define-public r-git2r
(package
(name "r-git2r")
- (version "0.18.0")
+ (version "0.19.0")
(source (origin
(method url-fetch)
(uri (cran-uri "git2r" version))
(sha256
(base32
- "0bgzdsdi9n6l8pchivs6a2g4ksa56qs8hygpyv2c0ndqmx4jxcwi"))))
+ "0ws6fbndmaafk2am4dwnz24qizxhld0yh54hgx0z6lzv3p1j209q"))))
(build-system r-build-system)
;; This R package contains modified sources of libgit2. This modified
;; version of libgit2 is built as the package is built. Hence libgit2 is
@@ -2254,25 +2251,21 @@ informative error messages when it's not available.")
(define-public r-devtools
(package
(name "r-devtools")
- (version "1.13.2")
+ (version "1.13.3")
(source (origin
(method url-fetch)
(uri (cran-uri "devtools" version))
(sha256
(base32
- "08ajsr12wd31lsx3jv5l9mq4063dc5fpr9lcnzra6kl59vi5pa7v"))))
+ "146wb09cmfh10vhn1ps2nmzx104zldb3nj9qv2ic0gbcikbbryp6"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-curl" ,r-curl)
- ("r-digest" ,r-digest)
- ("r-evaluate" ,r-evaluate)
+ `(("r-digest" ,r-digest)
("r-git2r" ,r-git2r)
("r-httr" ,r-httr)
("r-jsonlite" ,r-jsonlite)
("r-memoise" ,r-memoise)
- ("r-roxygen2" ,r-roxygen2)
("r-rstudioapi" ,r-rstudioapi)
- ("r-rversions" ,r-rversions)
("r-whisker" ,r-whisker)
("r-withr" ,r-withr)))
(home-page "https://github.com/hadley/devtools")
@@ -2284,13 +2277,13 @@ tools to simplify the devolpment of R packages.")
(define-public r-withr
(package
(name "r-withr")
- (version "1.0.2")
+ (version "2.0.0")
(source (origin
(method url-fetch)
(uri (cran-uri "withr" version))
(sha256
(base32
- "042z8nmqqilgrvhmbqrjc05qys3gzwq1rqy2wxp2bi5d41859493"))))
+ "0ncq9ygx33rx7aazn53p0a0vbr5xv0r6wbkzcwbhbwyd8k55bgin"))))
(build-system r-build-system)
(home-page "https://github.com/jimhester/withr")
(synopsis "Run code with temporarily modified global state")
@@ -2322,13 +2315,13 @@ time-of-day values, based on the @code{difftime} class.")
(define-public r-readr
(package
(name "r-readr")
- (version "1.1.0")
+ (version "1.1.1")
(source (origin
(method url-fetch)
(uri (cran-uri "readr" version))
(sha256
(base32
- "1g7g3gdmvq7nj8asw6fi13k38c420sy9696nqgkrhlvv5h13yqs7"))))
+ "1cvw5wdcqk88cp5fyv678mnmp66l3whcd2yh33p2qvx0168bja8s"))))
(build-system r-build-system)
(propagated-inputs
`(("r-rcpp" ,r-rcpp)
@@ -2346,13 +2339,13 @@ disk (or a connection).")
(define-public r-plotrix
(package
(name "r-plotrix")
- (version "3.6-4")
+ (version "3.6-5")
(source (origin
(method url-fetch)
(uri (cran-uri "plotrix" version))
(sha256
(base32
- "1wxzjnzvkl3aga51ad2xhv4s7v46kvnp4z0nz4cb9cn10057sfw8"))))
+ "01655y3qzy0283ppc85bi0g42g20zrqzcl0qb30cl6rcbflhymlb"))))
(build-system r-build-system)
(home-page "http://cran.r-project.org/web/packages/plotrix")
(synopsis "Various plotting functions")
@@ -2405,13 +2398,13 @@ well as additional utilities such as panel and axis annotation functions.")
(define-public r-rcpparmadillo
(package
(name "r-rcpparmadillo")
- (version "0.7.800.2.0")
+ (version "0.7.900.2.0")
(source (origin
(method url-fetch)
(uri (cran-uri "RcppArmadillo" version))
(sha256
(base32
- "025lh504nw7ir1f2xsqnvfkq9rg0rb2xzfn3a2s0b2a9snqdzzwr"))))
+ "01qsff2p1fp5i9lq7rsykrskgr6smz24ddspbl5ad9a8rkmczwyv"))))
(properties `((upstream-name . "RcppArmadillo")))
(build-system r-build-system)
(propagated-inputs
@@ -2497,14 +2490,14 @@ certain criterion, e.g., it contains a certain regular file.")
(define-public r-rmarkdown
(package
(name "r-rmarkdown")
- (version "1.4")
+ (version "1.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "rmarkdown" version))
(sha256
(base32
- "1dvs9cq88g61wfimifagq6y98yxavxzjan39jvpdsg98mafckq9g"))))
+ "0p8ph5z5pifk1nxc1bppkfs1ir5gjc6ap9n64b4255m2fdaqfrc7"))))
(properties `((upstream-name . "rmarkdown")))
(build-system r-build-system)
(propagated-inputs
@@ -2567,36 +2560,55 @@ variety of formats.")
and draw tables.")
(license license:gpl2+)))
-(define-public r-plogr
+(define-public r-pkgconfig
(package
- (name "r-plogr")
- (version "0.1-1")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "plogr" version))
- (sha256
- (base32
- "13zliqlbkl8b04k9ga0sx5jsh7k867gracgl84l2a9kcqy9mqx92"))))
+ (name "r-pkgconfig")
+ (version "2.0.1")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "pkgconfig" version))
+ (sha256
+ (base32
+ "0h2sp93fqqjbfqgq82a3i94ybnndx6ghaal8pbf99firnsjb40mb"))))
(build-system r-build-system)
- (home-page "https://github.com/krlmlr/plogr")
- (synopsis "R bindings for the plog C++ logging library")
- (description
- "This package provides the header files for a stripped-down version of
-the plog header-only C++ logging library, and a method to log to R's standard
-error stream.")
+ (home-page "https://github.com/gaborcsardi/pkgconfig")
+ (synopsis "Private configuration for R packages")
+ (description "This package provides the functionality to set configuration
+options on a per-package basis. Options set by a given package only apply to
+that package, other packages are unaffected.")
(license license:expat)))
+(define-public r-blob
+ (package
+ (name "r-blob")
+ (version "1.1.0")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "blob" version))
+ (sha256
+ (base32
+ "05pazzcyz3c3vd2l70zq9cf172cgjff4dnf419zigfnxycyn1mhn"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-tibble" ,r-tibble)))
+ (home-page "https://github.com/hadley/blob")
+ (synopsis "Simple S3 Class for representing vectors of binary data")
+ (description "Raw vectors in R are useful for storing a single binary
+object. What if you want to put a vector of them in a data frame? The blob
+package provides the blob object, a list of raw vectors, suitable for use as
+a column in data frame.")
+ (license license:gpl3+)))
+
(define-public r-rsqlite
(package
(name "r-rsqlite")
- (version "1.1-2")
+ (version "2.0")
(source (origin
(method url-fetch)
(uri (cran-uri "RSQLite" version))
(sha256
(base32
- "0mg9yhdvny3vjn72agai5ghqxd3vk8cd4x1lsc0gzc2b2dm2w0p4"))))
+ "1xpg1i1jkzkzv44k512k90c2vvl960pl2d4a3spwcha6yclyc3vz"))))
(properties `((upstream-name . "RSQLite")))
(build-system r-build-system)
(propagated-inputs
@@ -2604,13 +2616,16 @@ error stream.")
("r-bh" ,r-bh)
("r-memoise" ,r-memoise)
("r-plogr" ,r-plogr)
- ("r-rcpp" ,r-rcpp)))
+ ("r-rcpp" ,r-rcpp)
+ ("r-bit64" ,r-bit64)
+ ("r-blob" ,r-blob)
+ ("r-pkgconfig" ,r-pkgconfig)))
(home-page "https://github.com/rstats-db/RSQLite")
(synopsis "SQLite interface for R")
(description
"This package embeds the SQLite database engine in R and provides an
interface compliant with the DBI package. The source for the SQLite
-engine (version 3.8.6) is included.")
+engine (version 3.8.8.2) is included.")
(license license:lgpl2.0+)))
(define-public r-rcurl
@@ -2647,13 +2662,13 @@ ldap, and also supports cookies, redirects, authentication, etc.")
(define-public r-xml
(package
(name "r-xml")
- (version "3.98-1.6")
+ (version "3.98-1.9")
(source (origin
(method url-fetch)
(uri (cran-uri "XML" version))
(sha256
(base32
- "1amxx7fpik162nimrr7m5lvv6rhx9cwdyg44fxp1i5wm3y4skwnz"))))
+ "1hzkdkgs0nzmfg9wm7kyh1j9i0i2g7925whzlihqvg9grdlh3dx3"))))
(properties
`((upstream-name . "XML")))
(build-system r-build-system)
@@ -2765,14 +2780,14 @@ statements.")
(define-public r-segmented
(package
(name "r-segmented")
- (version "0.5-1.4")
+ (version "0.5-2.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "segmented" version))
(sha256
(base32
- "1740cvx2q4v23g4q0zkvg50s5bv8jcrlzzhm7fac4xn0riwmzp5i"))))
+ "1i576xksc761nyv2dmq86nwbgqvp0plz6bjcn69nkdwq2wbizmw8"))))
(build-system r-build-system)
(home-page "http://cran.r-project.org/web/packages/segmented")
(synopsis "Regression models with breakpoints estimation")
@@ -2806,13 +2821,13 @@ worker processes and collect and return the results on the master.")
(define-public r-sparsem
(package
(name "r-sparsem")
- (version "1.76")
+ (version "1.77")
(source (origin
(method url-fetch)
(uri (cran-uri "SparseM" version))
(sha256
(base32
- "16xnl9cacim35aawq6bmd2y6rrhnh1kg6dwsy3k5yslkfr1y9j62"))))
+ "0p6ljma2h12cq1xmy0cxb48ih8dhxxbnwkqzvx3cckxf2kprycm9"))))
(properties
`((upstream-name . "SparseM")))
(inputs
@@ -2993,14 +3008,14 @@ flexible than the orphaned \"base64\" package.")
(define-public r-irlba
(package
(name "r-irlba")
- (version "2.1.2")
+ (version "2.2.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "irlba" version))
(sha256
(base32
- "1qbcn0ix85pmk296jhpi419kvh06vxm5cq24yk013ps3g7fyi0si"))))
+ "0zfb7x1701n6gask0f8y2yq0vmb82xkxf6limp43ivx551hx600s"))))
(build-system r-build-system)
(propagated-inputs
`(("r-matrix" ,r-matrix)))
@@ -3015,14 +3030,14 @@ analysis of large sparse or dense matrices.")
(define-public r-glmnet
(package
(name "r-glmnet")
- (version "2.0-5")
+ (version "2.0-10")
(source
(origin
(method url-fetch)
(uri (cran-uri "glmnet" version))
(sha256
(base32
- "1cbpzmbv837fvq88rgn6mgzgr9f1wqp9fg8gh2kkmngvr1957a9c"))))
+ "07n2hz4fvjyv0siai8z8wqwfj8d58i8n1vzf1ckdfzp4kxa3z08d"))))
(build-system r-build-system)
(inputs
`(("gfortran" ,gfortran)))
@@ -3268,14 +3283,14 @@ performing parallel computations on multicore machines.")
(define-public r-igraph
(package
(name "r-igraph")
- (version "1.0.1")
+ (version "1.1.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "igraph" version))
(sha256
(base32
- "00jnm8v3kvxpxav5klld2z2nnkcpj4sdwv4ksipddy5mp04ysr6w"))))
+ "1v26wyk52snh8z6m5p7yqwcd9dbqifhm57j112i9x53ppi0npcc9"))))
(build-system r-build-system)
(native-inputs
`(("gfortran" ,gfortran)))
@@ -3285,7 +3300,8 @@ performing parallel computations on multicore machines.")
(propagated-inputs
`(("r-irlba" ,r-irlba)
("r-magrittr" ,r-magrittr)
- ("r-nmf" ,r-nmf)))
+ ("r-matrix" ,r-matrix)
+ ("r-pkgconfig" ,r-pkgconfig)))
(home-page "http://igraph.org")
(synopsis "Network analysis and visualization")
(description
@@ -3519,14 +3535,14 @@ the 'lite' version of the more complete @code{viridis} package.")
(define-public r-tidyr
(package
(name "r-tidyr")
- (version "0.6.1")
+ (version "0.6.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "tidyr" version))
(sha256
(base32
- "11hs3gqpbaw3w281as4m7j9n594ix5axfpwbyjsd0l62pwnzj217"))))
+ "14s57zrjm2phiy600z9ivq4az71z0ggmp6nj0js7yrybxf0dlah6"))))
(build-system r-build-system)
(propagated-inputs
`(("r-dplyr" ,r-dplyr)
@@ -3575,21 +3591,19 @@ It uses and relies on grid graphics and formal (S4) classes and methods.")
(define-public r-purrr
(package
(name "r-purrr")
- (version "0.2.2")
+ (version "0.2.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "purrr" version))
(sha256
(base32
- "0lss8q733nv7s154wargm6vnxq55qygnxakib8xdj4jv0y86sxc3"))))
+ "0j1y0nbvljcis9hgic4wbbzslcsidhpw0wzs7d2hx7a2ygi6mkma"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-bh" ,r-bh)
- ("r-dplyr" ,r-dplyr)
- ("r-lazyeval" ,r-lazyeval)
+ `(("r-tibble" ,r-tibble)
("r-magrittr" ,r-magrittr)
- ("r-rcpp" ,r-rcpp)))
+ ("r-rlang" ,r-rlang)))
(home-page "https://github.com/hadley/purrr")
(synopsis "Functional programming tools")
(description
@@ -3600,26 +3614,30 @@ features present in other programming languages.")
(define-public r-plotly
(package
(name "r-plotly")
- (version "4.5.6")
+ (version "4.7.1")
(source (origin
(method url-fetch)
(uri (cran-uri "plotly" version))
(sha256
(base32
- "09yw977yxlcxv57kni3q899zrxyxa6pznr06cylr9lqkyr7llfhx"))))
+ "0wj9lw7w28z8w9ip9vadv6sydjhqyg65kfiai9m3bndzz50b1m3w"))))
(build-system r-build-system)
(propagated-inputs
`(("r-base64enc" ,r-base64enc)
+ ("r-crosstalk" ,r-crosstalk)
("r-digest" ,r-digest)
+ ("r-data-table" ,r-data-table)
("r-dplyr" ,r-dplyr)
("r-ggplot2" ,r-ggplot2)
("r-hexbin" ,r-hexbin)
+ ("r-htmltools" ,r-htmltools)
("r-htmlwidgets" ,r-htmlwidgets)
("r-httr" ,r-httr)
("r-jsonlite" ,r-jsonlite)
("r-lazyeval" ,r-lazyeval)
("r-magrittr" ,r-magrittr)
("r-purrr" ,r-purrr)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)
("r-scales" ,r-scales)
("r-tibble" ,r-tibble)
("r-tidyr" ,r-tidyr)
@@ -3701,14 +3719,14 @@ character vector.")
(define-public r-googlesheets
(package
(name "r-googlesheets")
- (version "0.2.1")
+ (version "0.2.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "googlesheets" version))
(sha256
(base32
- "0ps13h1cv7fj5dh8s4nvwi64wnnyqdsadcaa4iizq1c5s615cwk3"))))
+ "18q0xmxn09b52rmky7gr5flp0awndcnsgb7zcvkzvkrkvmwad52b"))))
(build-system r-build-system)
(propagated-inputs
`(("r-cellranger" ,r-cellranger)
@@ -3795,21 +3813,20 @@ package instead.")
(define-public r-hmisc
(package
(name "r-hmisc")
- (version "4.0-2")
+ (version "4.0-3")
(source
(origin
(method url-fetch)
(uri (cran-uri "Hmisc" version))
(sha256
(base32
- "1lg9k0kj803wsm3h0a991q9l2lrgsqryzfv2z79b88kjbfapqpqr"))))
+ "1a7i7azag6pldgala85d8hh7wnx1shamyiriy4jfc65nxrr2lq8w"))))
(properties `((upstream-name . "Hmisc")))
(build-system r-build-system)
(native-inputs
`(("gfortran" ,gfortran)))
(propagated-inputs
`(("r-acepack" ,r-acepack)
- ("r-base64" ,r-base64)
("r-base64enc" ,r-base64enc)
("r-cluster" ,r-cluster)
("r-data-table" ,r-data-table)
@@ -3926,14 +3943,14 @@ existing packages provide.")
(define-public r-sfsmisc
(package
(name "r-sfsmisc")
- (version "1.1-0")
+ (version "1.1-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "sfsmisc" version))
(sha256
(base32
- "0580piv4n1nispl3pa8nfjjfnb8iwaqky2dzdy0aqnxrxgrhqhvz"))))
+ "0jzmbywlyzfxs7hlmyd0iynghfc9qp5sa5lnhr73y8r360yv1ahf"))))
(build-system r-build-system)
(home-page "http://cran.r-project.org/web/packages/sfsmisc")
(synopsis "Utilities from \"Seminar fuer Statistik\" ETH Zurich")
@@ -3967,14 +3984,14 @@ tests for whether a value is missing, empty or contains only @code{NA} and
(define-public r-gdata
(package
(name "r-gdata")
- (version "2.17.0")
+ (version "2.18.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "gdata" version))
(sha256
(base32
- "0kiy3jbcszlpmarg311spdsfi5pn89wgy742dxsbzxk8907fr5w0"))))
+ "0zwdj7lscgxr8r62ii8hbdh4mb7sa9w4f5nv32zzrxdvymcpya2b"))))
(build-system r-build-system)
(inputs
`(("perl" ,perl)))
@@ -4248,13 +4265,13 @@ Wall Street Journal, among others. This package also provides
(define-public r-statmod
(package
(name "r-statmod")
- (version "1.4.29")
+ (version "1.4.30")
(source (origin
(method url-fetch)
(uri (cran-uri "statmod" version))
(sha256
(base32
- "1fgzkwriba39d7946lq892f0si2fjdy37pvxki6ix8xyj8qgnci4"))))
+ "07v4x8af60alcw6vbiwf5fp25bhra61kvxz9kqx64lszm0i1fb4x"))))
(build-system r-build-system)
(home-page "http://cran.r-project.org/web/packages/statmod")
(native-inputs
@@ -4274,13 +4291,13 @@ dispersion modeling and Tweedie power-law families.")
(define-public r-rann
(package
(name "r-rann")
- (version "2.5")
+ (version "2.5.1")
(source (origin
(method url-fetch)
(uri (cran-uri "RANN" version))
(sha256
(base32
- "007cgqg9bybg2zlljbv5m6cmlm3r6i251018rpgjcn0xnm9sjsj7"))))
+ "0il5i99vbcagnxvb15af5n37g04a4q1x96bz73zh3jhki9fpw9vm"))))
(properties
`((upstream-name . "RANN")))
(build-system r-build-system)
@@ -4343,14 +4360,14 @@ Farebrother's algorithm or Liu et al.'s algorithm.")
(define-public r-cowplot
(package
(name "r-cowplot")
- (version "0.7.0")
+ (version "0.8.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "cowplot" version))
(sha256
(base32
- "03iimcsh1pk7iqzjdlfcj43b8khijdk4hg00j4jdllv19xsfb0hx"))))
+ "03bh0r6ynr95gk4lc8asfi3kpmskm59vfzwn417pdziha3igs5x6"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ggplot2" ,r-ggplot2)
@@ -4416,14 +4433,14 @@ regression.")
(define-public r-fastica
(package
(name "r-fastica")
- (version "1.2-0")
+ (version "1.2-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "fastICA" version))
(sha256
(base32
- "0ykk78fsk5da2g16i4wji85bvji7nayjvkfp07hyaxq9d15jmf0r"))))
+ "108z2ymby5y4h8l4l2krqwm28rya93gq09yylgilnm3afvfrfabg"))))
(properties `((upstream-name . "fastICA")))
(build-system r-build-system)
(home-page "http://cran.r-project.org/web/packages/fastICA")
@@ -4499,14 +4516,14 @@ to change in the future.")
(define-public r-flexmix
(package
(name "r-flexmix")
- (version "2.3-13")
+ (version "2.3-14")
(source
(origin
(method url-fetch)
(uri (cran-uri "flexmix" version))
(sha256
(base32
- "1i205yw3kkxs27gqcs6zx0c2mh16p332a2p06wq6fdzb20bazg3z"))))
+ "0sl4zxh1sb2sr5q7svjw9ihrm219jzn82yrc9d43q6r1b8bpyz43"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)
@@ -4525,14 +4542,14 @@ models, generalized linear models and model-based clustering.")
(define-public r-mclust
(package
(name "r-mclust")
- (version "5.2.3")
+ (version "5.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "mclust" version))
(sha256
(base32
- "0045msdw1xndfmlylbnm1ss716iiqzqwj454a97gmcq5kph86qzz"))))
+ "0h5syvpg3azrz5d10z2afilaa27jb4azi38idzlv05mfcs16s6rb"))))
(build-system r-build-system)
(native-inputs
`(("gfortran" ,gfortran)))
@@ -4672,14 +4689,14 @@ groupings.")
(define-public r-vgam
(package
(name "r-vgam")
- (version "1.0-3")
+ (version "1.0-4")
(source
(origin
(method url-fetch)
(uri (cran-uri "VGAM" version))
(sha256
(base32
- "0wr6szcpj8r4a1rlzgd6iym7khin69fmvxcf37iyvs8mms86dfr3"))))
+ "0r59hyp3afmvms890b3v2yyckf8v0qkjf2w11rnqd2zgg1gri0g5"))))
(properties `((upstream-name . "VGAM")))
(build-system r-build-system)
(inputs
@@ -4697,14 +4714,14 @@ VGLMs can be loosely thought of as multivariate generalised linear models.")
(define-public r-pbapply
(package
(name "r-pbapply")
- (version "1.3-2")
+ (version "1.3-3")
(source
(origin
(method url-fetch)
(uri (cran-uri "pbapply" version))
(sha256
(base32
- "1sdmjlnwxb99f95g5v8k8mirrkzw99yig377v0qi9lzwjgd6fqqr"))))
+ "0iqhymf65jffh00qf056h1p76xf92bfmij6aymlmgnvn24fv4ybk"))))
(build-system r-build-system)
(home-page "https://github.com/psolymos/pbapply")
(synopsis "Adding progress bar to apply functions")
@@ -4761,14 +4778,14 @@ based on an interface to Fortran implementations by M. J. D. Powell.")
(define-public r-rcppeigen
(package
(name "r-rcppeigen")
- (version "0.3.2.9.1")
+ (version "0.3.3.3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "RcppEigen" version))
(sha256
(base32
- "1ih940yjbc530cmpl6kx1jic7pz2ps1w5vrvy32qizh6m5s3lk7x"))))
+ "0zz9v0f8nnlvhhqv91lkyfblvjnmav84l89mr6vmbqjc2hzqd3n8"))))
(properties `((upstream-name . "RcppEigen")))
(build-system r-build-system)
(propagated-inputs
@@ -4939,14 +4956,14 @@ bootstrap test for generalized linear mixed models.")
(define-public r-car
(package
(name "r-car")
- (version "2.1-4")
+ (version "2.1-5")
(source
(origin
(method url-fetch)
(uri (cran-uri "car" version))
(sha256
(base32
- "0a6v7rsd1xsdyapnfqy37m7c4kx9wslkzsizc9k0lmnba0bwyfgx"))))
+ "1bm0ks9ga60z3izgq0d4kvirr9v4yf1820d1wznkihnbb55bc3m6"))))
(build-system r-build-system)
(propagated-inputs
`(("r-mass" ,r-mass)
@@ -5083,14 +5100,14 @@ multivariate case.")
(define-public r-tclust
(package
(name "r-tclust")
- (version "1.2-3")
+ (version "1.2-7")
(source
(origin
(method url-fetch)
(uri (cran-uri "tclust" version))
(sha256
(base32
- "0a1b7yp4l9wf6ic5czizyl2cnxrc1virj0icr8i6m1vv23jd8jfp"))))
+ "1mvqr280c6kwpg98byd0r1y0qf238xn2x15y8npqch6lpcszlb3x"))))
(build-system r-build-system)
(propagated-inputs
`(("r-cluster" ,r-cluster)
@@ -5108,17 +5125,19 @@ diagnostic tools (@code{ctlcurves} and @code{DiscrFact}).")
(define-public r-ranger
(package
(name "r-ranger")
- (version "0.7.0")
+ (version "0.8.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "ranger" version))
(sha256
(base32
- "0g1rnpk4c06lmy0r5n0j7i2xna190kqalmxp42d9gnk3drnb1x43"))))
+ "1fdbm879wx3hlng8s4c4f8f2x5yxz57llakcqnpa0lymybidw3vz"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-rcpp" ,r-rcpp)))
+ `(("r-rcpp" ,r-rcpp)
+ ("r-matrix" ,r-matrix)
+ ("r-rcppeigen" ,r-rcppeigen)))
(home-page "https://github.com/imbs-hl/ranger")
(synopsis "Fast implementation of random forests")
(description
generated by cgit v1.2.3 (git 2.25.4) at 2024-11-08 09:05:37 +0000