diff options
Diffstat (limited to 'gnu/packages/python.scm')
| -rw-r--r-- | gnu/packages/python.scm | 306 |
1 files changed, 268 insertions, 38 deletions
diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 6fe83b2a8b..346faf434c 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -41,7 +41,7 @@ ;;; Copyright © 2017 Mathieu Othacehe <m.othacehe@gmail.com> ;;; Copyright © 2017 José Miguel Sánchez García <jmi2k@openmailbox.org> ;;; Copyright © 2017 Roel Janssen <roel@gnu.org> -;;; Copyright © 2017 Kei Kebreau <kei@openmailbox.org> +;;; Copyright © 2017 Kei Kebreau <kkebreau@posteo.net> ;;; Copyright © 2017 Rutger Helling <rhelling@mykolab.com> ;;; Copyright © 2017 Muriithi Frederick Muriuki <fredmanglis@gmail.com> ;;; @@ -68,6 +68,7 @@ #:use-module (gnu packages attr) #:use-module (gnu packages backup) #:use-module (gnu packages bash) + #:use-module (gnu packages check) #:use-module (gnu packages compression) #:use-module (gnu packages crypto) #:use-module (gnu packages databases) @@ -2835,17 +2836,23 @@ somewhat intelligeble.") (define-public python-pyjwt (package (name "python-pyjwt") - (version "1.4.0") + (version "1.5.2") (source (origin (method url-fetch) (uri (pypi-uri "PyJWT" version)) (sha256 (base32 - "1556v2jppd8mjkkj66pxb5rcazm35jq81r233mdl8hfmz9n3icp1")))) + "0pvr3iymab7v2qz74ann760z7qahqgqszxz5iqqbaqv4z2zz0y8i")) + (modules '((guix build utils))) + (snippet + '(begin + (for-each delete-file-recursively + (find-files "." "\\.pyc$")) + #t)))) (build-system python-build-system) (native-inputs - `(("python-pytest" ,python-pytest) + `(("python-pytest" ,python-pytest-3.0) ("python-pytest-cov" ,python-pytest-cov) ("python-pytest-runner" ,python-pytest-runner))) (home-page "https://github.com/progrium/pyjwt") @@ -3030,15 +3037,27 @@ for Python.") (define-public python-jinja2 (package (name "python-jinja2") - (version "2.8") + (version "2.9.6") (source (origin (method url-fetch) (uri (pypi-uri "Jinja2" version)) (sha256 (base32 - "1x0v41lp5m1pjix3l46zx02b7lqp2hflgpnxwkywxynvi3zz47xw")))) + "1zzrkywhziqffrzks14kzixz7nd4yh2vc0fb04a68vfd2ai03anx")))) (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + ;; These files cannot be built with Python < 3.6. See + ;; https://github.com/pallets/jinja/issues/655 + ;; FIXME: Remove this when the "python" package is upgraded. + (add-after 'unpack 'delete-incompatible-files + (lambda _ + (for-each delete-file + '("jinja2/asyncsupport.py" + "jinja2/asyncfilters.py")) + #t))))) (propagated-inputs `(("python-markupsafe" ,python-markupsafe))) (home-page "http://jinja.pocoo.org/") @@ -3762,6 +3781,71 @@ objects.") (define-public python2-munch (package-with-python2 python-munch)) +(define-public python-colormath + (package + (name "python-colormath") + (version "2.1.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "colormath" version)) + (sha256 + (base32 + "01wp5xwm0a89wdm1dc9rr1ij90idzdiiipxdj1yslhqzkhnjnfh0")))) + (build-system python-build-system) + (propagated-inputs + `(("python-networkx" ,python-networkx) + ("python-numpy" ,python-numpy))) + (home-page "https://github.com/gtaylor/python-colormath") + (synopsis "Color math and conversion library") + (description + "This is a Python library for color math and conversions.") + (license license:bsd-3))) + +(define-public python2-colormath + (package-with-python2 python-colormath)) + +(define-public python-spectra + (package + (name "python-spectra") + (version "0.0.8") + (source + (origin + (method url-fetch) + (uri (pypi-uri "spectra" version)) + (sha256 + (base32 + "0n87kzhpkml2s2q91rdkl8wz2kkv5b0bkrgww45lxa5vq34qh6w5")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (zero? (system* "nosetests" "-v"))))))) + (propagated-inputs + `(("python-colormath" ,python-colormath))) + (native-inputs + `(("python-nose" ,python-nose))) + (home-page "http://github.com/jsvine/spectra") + (synopsis "Color scales and color conversion") + (description + "This package provides a Python library intended to make color math, +color scales, and color space conversion easy. It has support for: + +@enumerate +@item Color scales +@item Color ranges +@item Color blending +@item Brightening/darkening colors +@item Saturating/desaturating colors +@item Conversion to/from multiple color spaces. +@end enumerate\n") + (license license:expat))) + +(define-public python2-spectra + (package-with-python2 python-spectra)) + (define-public python2-fastlmm (package (name "python2-fastlmm") @@ -4313,33 +4397,56 @@ operators such as union, intersection, and difference.") (define-public python-rpy2 (package (name "python-rpy2") - (version "2.7.6") + (version "2.9.0") (source (origin (method url-fetch) (uri (pypi-uri "rpy2" version)) (sha256 (base32 - "0nhan2qvrw7b7gg5zddwa22kybdv3x1g26vkd7q8lvnkgzrs4dga")))) + "0bqihjrdqwj5r1h86shvfb1p5hfr4a6klv1v54bzfr9r144w3rni")))) (build-system python-build-system) (arguments - '(#:phases + '(#:modules ((ice-9 ftw) + (srfi srfi-1) + (srfi srfi-26) + (guix build utils) + (guix build python-build-system)) + #:phases (modify-phases %standard-phases - (delete 'check) - (add-after 'install 'check + ;; Without this phase the test loader cannot find the directories, in + ;; which it is supposed to look for test files. + (add-after 'unpack 'fix-tests + (lambda* (#:key outputs #:allow-other-keys) + (substitute* "rpy/tests.py" + (("loader.discover\\(") + "loader.discover(rpy_root + '/' +")) + #t)) + (replace 'check (lambda* (#:key outputs inputs #:allow-other-keys) - ;; It's easier to run tests after install. - ;; Make installed package available for running the tests - (add-installed-pythonpath inputs outputs) + (let ((cwd (getcwd))) + (setenv "PYTHONPATH" + (string-append cwd "/build/" + (find (cut string-prefix? "lib" <>) + (scandir (string-append cwd "/build"))) + ":" + (getenv "PYTHONPATH")))) (zero? (system* "python" "-m" "rpy2.tests" "-v"))))))) (propagated-inputs - `(("python-six" ,python-six))) + `(("python-six" ,python-six) + ("python-jinja2" ,python-jinja2) + ("python-pytz" ,python-pytz))) (inputs `(("readline" ,readline) ("icu4c" ,icu4c) ("pcre" ,pcre) ("r-minimal" ,r-minimal) - ("r-survival" ,r-survival))) + ("r-survival" ,r-survival) + ("r-ggplot2" ,r-ggplot2) + ("r-rsqlite" ,r-rsqlite) + ("r-dplyr" ,r-dplyr) + ("r-dbplyr" ,r-dbplyr) + ("python-numpy" ,python-numpy))) (native-inputs `(("zlib" ,zlib))) (home-page "http://rpy.sourceforge.net/") @@ -4348,14 +4455,10 @@ operators such as union, intersection, and difference.") low-level interface to R from Python, a proposed high-level interface, including wrappers to graphical libraries, as well as R-like structures and functions.") - (license license:gpl3+))) - -(define-public python2-rpy2 - (let ((rpy2 (package-with-python2 python-rpy2))) - (package (inherit rpy2) - (propagated-inputs - `(("python2-singledispatch" ,python2-singledispatch) - ,@(package-propagated-inputs rpy2)))))) + ;; Any of these licenses can be picked for the R interface. The whole + ;; project is released under GPLv2+ according to the license declaration + ;; in "setup.py". + (license (list license:mpl2.0 license:gpl2+ license:lgpl2.1+)))) (define-public python-scipy (package @@ -9095,16 +9198,13 @@ with python-requests.") (define-public python-click-threading (package (name "python-click-threading") - (version "0.2.0") + (version "0.4.3") (source (origin (method url-fetch) - (uri (string-append - "https://pypi.python.org/packages/" - "fe/b7/e7f609d18a2a351cb71616adcf54df1acd82f83cb9b5936935a4d20e2c23/" - "click-threading-" version ".tar.gz")) + (uri (pypi-uri "click-threading" version)) (sha256 (base32 - "18bcqikxwb3drb8rf60cclxkxw52521b38ax3byah6j8cn8y9p4j")))) + "0xs4bg2ws0zgyiplk312l049hi23c2zqf1g771rjhh5vr2msk4cg")))) (build-system python-build-system) (propagated-inputs `(("python-click" ,python-click))) @@ -9117,13 +9217,13 @@ applications.") (define-public python-click-log (package (name "python-click-log") - (version "0.1.8") + (version "0.2.0") (source (origin (method url-fetch) (uri (pypi-uri "click-log" version)) (sha256 (base32 - "14ikfjfgnzf21mjniq9lfk2igzykgzfvwwrk85nw2b9fq44109sp")))) + "1bjrfxji1yv4fj0g78ri2yfgn2wbivn8g69fxfinxvxpmighhshp")))) (build-system python-build-system) (propagated-inputs `(("python-click" ,python-click))) @@ -9328,13 +9428,13 @@ processes across test runs.") (define-public python-icalendar (package (name "python-icalendar") - (version "3.11.6") + (version "3.11.7") (source (origin (method url-fetch) (uri (pypi-uri "icalendar" version)) (sha256 (base32 - "1ny9mbm9zgghl612b8wc4ap52bz3kgl486d7f307gxjmlqgz3i64")))) + "0ahf1i98wjizhld2qd7v2vmvzsmdw08mmins82bf3fpbnp2sxbgc")))) (build-system python-build-system) (propagated-inputs `(("python-dateutil" ,python-dateutil) @@ -13376,7 +13476,7 @@ PNG, JPEG, JPEG2000 and GIF files in pure Python.") (origin (method git-fetch) (uri (git-reference - (url "git://github.com/tgalal/python-axolotl-curve25519") + (url "https://github.com/tgalal/python-axolotl-curve25519") (commit "e4a9c4de0eae27223200579c58d1f8f6d20637e2"))) (file-name (string-append name "-" version "-checkout")) (sha256 @@ -13991,7 +14091,22 @@ parse many formal languages.") "1i9gik0xrj6jmi95s5w988jl1y265baz5xm5pbqdyvsh8h9ln6yq")))) (build-system python-build-system) (arguments - `(#:python ,python-2)) + `(#:python ,python-2 + #:phases + (modify-phases %standard-phases + ;; check phase needs to be run before the build phase. If not, + ;; coverage-test-runner looks for tests for the built source files, + ;; and fails. + (delete 'check) + (add-before 'build 'check + (lambda _ + ;; Disable python3 tests + (substitute* "check" + (("python3") "# python3")) + (zero? (system* "./check"))))))) + (native-inputs + `(("python2-coverage-test-runner" ,python2-coverage-test-runner) + ("python2-pep8" ,python2-pep8))) (propagated-inputs `(("python2-pyaml" ,python2-pyaml))) (home-page "https://liw.fi/cliapp/") @@ -14016,8 +14131,20 @@ iterating over input files.") (base32 "0vivqbw7ddhsq1zj3g9cvvv4f0phl0pis2smsnwcr2szz2fk3hl6")))) (build-system python-build-system) + (native-inputs + `(("python2-coverage-test-runner" ,python2-coverage-test-runner) + ("python2-pep8" ,python2-pep8))) (arguments - `(#:python ,python-2)) + `(#:python ,python-2 + #:phases + (modify-phases %standard-phases + ;; check phase needs to be run before the build phase. If not, + ;; coverage-test-runner looks for tests for the built source files, + ;; and fails. + (delete 'check) + (add-before 'build 'check + (lambda _ + (zero? (system* "make" "check"))))))) (home-page "https://liw.fi/ttystatus/") (synopsis "Python library for showing progress reporting and status updates on terminals") @@ -14064,12 +14191,26 @@ happens using the @code{logging} library.") (uri (string-append "http://git.liw.fi/cgi-bin/cgit/cgit.cgi/larch/snapshot/larch-" version ".tar.gz")) + (patches (search-patches + "python2-larch-coverage-4.0a6-compatibility.patch")) (sha256 (base32 "1p4knkkavlqymgciz2wbcnfrdgdbafhg14maplnk4vbw0q8xs663")))) (build-system python-build-system) (arguments - `(#:python ,python-2)) + `(#:python ,python-2 + #:phases + (modify-phases %standard-phases + ;; check phase needs to be run before the build phase. If not, + ;; coverage-test-runner looks for tests for the built source files, + ;; and fails. + (delete 'check) + (add-before 'build 'check + (lambda _ + (zero? (system* "make" "check"))))))) + (native-inputs + `(("cmdtest" ,cmdtest) + ("python2-coverage-test-runner" ,python2-coverage-test-runner))) (propagated-inputs `(("python2-tracing" ,python2-tracing))) (home-page "https://liw.fi/larch/") @@ -15916,6 +16057,51 @@ pure Python module.") (define-public python2-rencode (package-with-python2 python-rencode)) +(define-public python-xenon + (package + (name "python-xenon") + (version "0.5.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "xenon" version)) + (sha256 + (base32 + "14kby2y48vp3sgwxqlm5d5789yibqwb1qli5fwcmdqg3iayrbklc")))) + (build-system python-build-system) + (native-inputs + `(("python-pyyaml" ,python-pyyaml) + ("python-radon" ,python-radon) + ("python-requests" ,python-requests) + ("python-flake8" ,python-flake8) + ("python-tox" ,python-tox))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'build 'patch-test-requirements + (lambda* (#:key inputs #:allow-other-keys) + ;; Update requirements from dependency==version to + ;; dependency>=version. + (substitute* "requirements.txt" + (("==") ">=") + ((",<1.5.0") "")) + ;; Remove httpretty dependency for tests. + (substitute* "setup.py" + (("httpretty") "")) + #t))))) + (home-page "https://xenon.readthedocs.org/") + (synopsis "Monitor code metrics for Python on your CI server") + (description + "Xenon is a monitoring tool based on Radon. It monitors code complexity. +Ideally, @code{xenon} is run every time code is committed. Through command +line options, various thresholds can be set for the complexity of code. It +will fail (i.e. it will exit with a non-zero exit code) when any of these +requirements is not met.") + (license license:expat))) + +(define-public python2-xenon + (package-with-python2 python-xenon)) + (define-public python-flask-principal (package (name "python-flask-principal") @@ -15965,3 +16151,47 @@ authentication for Flask routes.") (define-public python2-flask-httpauth (package-with-python2 python-flask-httpauth)) + +(define-public python-pysocks + (package + (name "python-pysocks") + (version "1.6.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "PySocks" version)) + (sha256 + (base32 + "1krkiss578zqwcg4c8iqz1hwscwhsvy2djp3xyvps5gsgvr2j0yh")))) + (build-system python-build-system) + (arguments `(#:tests? #f)) + (home-page "https://github.com/Anorov/PySocks") + (synopsis "SOCKS client module") + (description "@code{pysocks} is an updated and semi-actively maintained +version of @code{SocksiPy} with bug fixes and extra features.") + (license license:bsd-3))) + +(define-public python2-pysocks + (package-with-python2 python-pysocks)) + +(define-public python-pyaes + (package + (name "python-pyaes") + (version "1.6.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyaes" version)) + (sha256 + (base32 + "0bp9bjqy1n6ij1zb86wz9lqa1dhla8qr1d7w2kxyn7jbj56sbmcw")))) + (build-system python-build-system) + (home-page "https://github.com/ricmoo/pyaes") + (synopsis "Implementation of AES in Python") + (description "This package contains a pure-Python implementation of the +AES block cipher algorithm and the common modes of operation (CBC, CFB, CTR, +ECB and OFB).") + (license license:expat))) + +(define-public python2-pyaes + (package-with-python2 python-pyaes)) |