diff options
Diffstat (limited to 'gnu/packages/python.scm')
| -rw-r--r-- | gnu/packages/python.scm | 337 |
1 files changed, 279 insertions, 58 deletions
diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 29b47f357c..914c2dc23c 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -26,7 +26,7 @@ (define-module (gnu packages python) #:use-module ((guix licenses) - #:select (asl2.0 bsd-3 bsd-2 non-copyleft cc0 x11 x11-style + #:select (asl2.0 bsd-4 bsd-3 bsd-2 non-copyleft cc0 x11 x11-style gpl2 gpl2+ gpl3+ lgpl2.0+ lgpl2.1 lgpl2.1+ lgpl3+ psfl public-domain x11-style)) #:use-module ((guix licenses) #:select (expat zlib) #:prefix license:) @@ -45,6 +45,7 @@ #:use-module (gnu packages libffi) #:use-module (gnu packages maths) #:use-module (gnu packages multiprecision) + #:use-module (gnu packages networking) #:use-module (gnu packages ncurses) #:use-module (gnu packages openssl) #:use-module (gnu packages perl) @@ -628,6 +629,44 @@ datetime module, available in Python 2.3+.") "Parse human-readable date/time text") (license asl2.0))) +(define-public python-pandas + (package + (name "python-pandas") + (version "0.16.0") + (source + (origin + (method url-fetch) + (uri (string-append "https://pypi.python.org/packages/source/p/" + "pandas/pandas-" version ".tar.gz")) + (sha256 + (base32 "1wfrp8dx1zcsry6f09ndza6qm1yr7f163211f4l9vjlnhxpxw4s0")))) + (build-system python-build-system) + (arguments + `(;; Three tests fail: + ;; - test_read_google + ;; - test_read_yahoo + ;; - test_month_range_union_tz_dateutil + #:tests? #f)) + (propagated-inputs + `(("python-numpy" ,python-numpy) + ("python-pytz" ,python-pytz) + ("python-dateutil" ,python-dateutil-2))) + (native-inputs + `(("python-nose" ,python-nose) + ("python-setuptools" ,python-setuptools))) + (home-page "http://pandas.pydata.org") + (synopsis "Data structures for data analysis, time series, and statistics") + (description + "Pandas is a Python package providing fast, flexible, and expressive data +structures designed to make working with structured (tabular, +multidimensional, potentially heterogeneous) and time series data both easy +and intuitive. It aims to be the fundamental high-level building block for +doing practical, real world data analysis in Python.") + (license bsd-3))) + +(define-public python2-pandas + (package-with-python2 python-pandas)) + (define-public python-tzlocal (package (name "python-tzlocal") @@ -1023,14 +1062,14 @@ syntax.") (define-public scons (package (name "scons") - (version "2.1.0") + (version "2.3.4") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/scons/scons-" version ".tar.gz")) (sha256 (base32 - "07cjn4afb2cljjrd3cr7xf062qq58z8q96f58z6yplhdyqafsfa1")))) + "0hdlci43wjz8maryj83mz04ir6rwcdrrzpd7cpzvdlzycqhdfmsb")))) (build-system python-build-system) (arguments ;; With Python 3.x, fails to build with a syntax error. @@ -1598,6 +1637,33 @@ is used by the Requests library to verify HTTPS requests.") (define-public python2-certifi (package-with-python2 python-certifi)) +(define-public python-click + (package + (name "python-click") + (version "4.0") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/c/click/click-" + version ".tar.gz")) + (sha256 + (base32 "0294x9g28w6zgswl0rsygkwi0wf6n480gf7fiiw5f9az3xhh77pl")))) + (build-system python-build-system) + (native-inputs + `(("python-setuptools" ,python-setuptools))) + (home-page "http://click.pocoo.org") + (synopsis "Command line library for Python") + (description + "Click is a Python package for creating command line interfaces in a +composable way with as little code as necessary. Its name stands for +\"Command Line Interface Creation Kit\". It's highly configurable but comes +with sensible defaults out of the box.") + (license bsd-3))) + +(define-public python2-click + (package-with-python2 python-click)) + (define-public python-requests (package (name "python-requests") @@ -2065,6 +2131,101 @@ mining and data analysis.") (alist-delete "python-scipy" (package-propagated-inputs scikit)))))))) +(define-public python-scikit-image + (package + (name "python-scikit-image") + (version "0.11.3") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/s/scikit-image/scikit-image-" + version ".tar.gz")) + (sha256 + (base32 "0jz416fqvpahqyffw8plmszzfj669w8wvf3y9clnr5lr6a7md3kn")))) + (build-system python-build-system) + (propagated-inputs + `(("python-matplotlib" ,python-matplotlib) + ("python-networkx" ,python-networkx) + ("python-numpy" ,python-numpy) + ("python-scipy" ,python-scipy) + ("python-six" ,python-six) + ("python-pillow" ,python-pillow))) + (native-inputs + `(("python-cython" ,python-cython) + ("python-setuptools" ,python-setuptools))) + (home-page "http://scikit-image.org/") + (synopsis "Image processing in Python") + (description + "scikit-image is a collection of algorithms for image processing.") + (license bsd-3))) + +(define-public python2-scikit-image + (let ((scikit-image (package-with-python2 python-scikit-image))) + (package (inherit scikit-image) + (native-inputs + `(("python2-mock" ,python2-mock) + ,@(package-native-inputs scikit-image))) + (propagated-inputs + `(("python2-pytz" ,python2-pytz) + ,@(package-propagated-inputs scikit-image)))))) + +(define-public python-redis + (package + (name "python-redis") + (version "2.10.3") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/r/redis/redis-" + version ".tar.gz")) + (sha256 + (base32 "1701qjwn4n05q90fdg4bsg96s27xf5s4hsb4gxhv3xk052q3gyx4")))) + (build-system python-build-system) + ;; Tests require a running Redis server + (arguments '(#:tests? #f)) + (native-inputs + `(("python-setuptools" ,python-setuptools) + ("python-pytest" ,python-pytest))) + (home-page "https://github.com/andymccurdy/redis-py") + (synopsis "Redis Python client") + (description + "This package provides a Python interface to the Redis key-value store.") + (license license:expat))) + +(define-public python2-redis + (package-with-python2 python-redis)) + +(define-public python-rq + (package + (name "python-rq") + (version "0.5.2") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/r/rq/rq-" + version ".tar.gz")) + (sha256 + (base32 "0b0z5hn8wkfg300hx7816csgv3bcfamlr29fi3yzgqmpqxwj3fix")))) + (build-system python-build-system) + (propagated-inputs + `(("python-click" ,python-click) + ("python-redis" ,python-redis))) + (native-inputs + `(("python-setuptools" ,python-setuptools))) + (home-page "http://python-rq.org/") + (synopsis "Simple job queues for Python") + (description + "RQ (Redis Queue) is a simple Python library for queueing jobs and +processing them in the background with workers. It is backed by Redis and it +is designed to have a low barrier to entry.") + (license bsd-2))) + +(define-public python2-rq + (package-with-python2 python-rq)) + (define-public python-cython (package (name "python-cython") @@ -2122,7 +2283,7 @@ writing C extensions for Python as easy as Python itself.") (build-system python-build-system) (inputs `(("python-nose" ,python-nose) - ("atlas" ,atlas))) + ("openblas" ,openblas))) (native-inputs `(("gfortran" ,gfortran-4.8))) (arguments @@ -2130,16 +2291,18 @@ writing C extensions for Python as easy as Python itself.") (alist-cons-before 'build 'set-environment-variables (lambda* (#:key inputs #:allow-other-keys) - (let* ((atlas-threaded - (string-append (assoc-ref inputs "atlas") - "/lib/libtatlas.so")) - ;; On single core CPUs only the serial library is created. - (atlas-lib - (if (file-exists? atlas-threaded) - atlas-threaded - (string-append (assoc-ref inputs "atlas") - "/lib/libsatlas.so")))) - (setenv "ATLAS" atlas-lib))) + (call-with-output-file "site.cfg" + (lambda (port) + (format port "[openblas] +libraries = openblas +library_dirs = ~a/lib +include_dirs = ~a/include +" (assoc-ref inputs "openblas") (assoc-ref inputs "openblas")))) + ;; Use "gcc" executable, not "cc". + (substitute* "numpy/distutils/system_info.py" + (("c = distutils\\.ccompiler\\.new_compiler\\(\\)") + "c = distutils.ccompiler.new_compiler(); c.set_executables(compiler='gcc',compiler_so='gcc',linker_exe='gcc',linker_so='gcc -shared')")) + #t) ;; Tests can only be run after the library has been installed and not ;; within the source directory. (alist-cons-after @@ -2627,7 +2790,7 @@ services for your Python modules and applications.") (define-public python-pillow (package (name "python-pillow") - (version "2.6.1") + (version "2.8.1") (source (origin (method url-fetch) @@ -2635,17 +2798,19 @@ services for your Python modules and applications.") "Pillow/Pillow-" version ".tar.gz")) (sha256 (base32 - "0iw36c73wkhz88wa78v6l43llsb080ihw8yq7adhfqxdib7l4hzr")))) + "15n92axxph2s3kvg68bki9gv3nzwgq7130kp7wbblpi1l0cc2q47")))) (build-system python-build-system) (native-inputs `(("python-setuptools" ,python-setuptools) ("python-nose" ,python-nose))) (inputs - `(("lcms" ,lcms) + `(("freetype" ,freetype) + ("lcms" ,lcms) ("zlib" ,zlib) ("libjpeg" ,libjpeg) ("openjpeg" ,openjpeg) - ("libtiff" ,libtiff))) + ("libtiff" ,libtiff) + ("libwebp" ,libwebp))) (propagated-inputs `(;; Used at runtime for pkg_resources ("python-setuptools" ,python-setuptools))) @@ -3113,9 +3278,7 @@ features useful for text console applications.") `(("pkg-config" ,pkg-config))) (inputs `(("python" ,python) - ("dbus" ,dbus) - ("dbus-glib" ,dbus-glib) - ("glib" ,glib))) + ("dbus-glib" ,dbus-glib))) (synopsis "Python bindings for D-bus") (description "python-dbus provides bindings for libdbus, the reference implementation of D-Bus.") @@ -3201,43 +3364,6 @@ libxml2 and libxslt.") (define-public python2-lxml (package-with-python2 python-lxml)) -(define-public python-pillow - (package - (name "python-pillow") - (version "2.7.0") - (source - (origin - (method url-fetch) - (uri (string-append - "https://pypi.python.org/packages/source/P/Pillow/Pillow-" - version - ".tar.gz")) - (sha256 - (base32 - "1y0rysgd7vqpl5lh0lsra7j2k30azwxqlh5jnqk1i0pmfc735s96")))) - (build-system python-build-system) - (inputs - `(("freetype" ,freetype) - ("lcms" ,lcms) - ("libjpeg" ,libjpeg) - ("libtiff" ,libtiff) - ("openjpeg" ,openjpeg) - ("python-setuptools" ,python-setuptools) - ("zlib" ,zlib))) - (arguments - `(#:tests? #f)) ; no check target - (home-page "http://python-pillow.github.io/") - (synopsis "Pillow fork of Python Imaging Library") - (description "Pillow is a fork of the Python Imaging Library (PIL).") - ;; PIL license, see - ;; http://www.pythonware.com/products/pil/license.htm - (license (x11-style - "file://PKG-INFO" - "See http://www.pythonware.com/products/pil/license.htm")))) - -(define-public python2-pillow - (package-with-python2 python-pillow)) - (define-public python2-pil (package (name "python2-pil") @@ -3446,6 +3572,67 @@ providing a clean and modern domain specific specification language (DSL) in Python style, together with a fast and comfortable execution environment.") (license license:expat))) +(define-public python-seaborn + (package + (name "python-seaborn") + (version "0.5.1") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/s/seaborn/seaborn-" + version ".tar.gz")) + (sha256 + (base32 "1236abw18ijjglmv60q85ckqrvgf5qyy4zlq7nz5aqfg6q87z3wc")))) + (build-system python-build-system) + (propagated-inputs + `(("python-pandas" ,python-pandas) + ("python-matplotlib" ,python-matplotlib) + ("python-scipy" ,python-scipy))) + (native-inputs + `(("python-setuptools" ,python-setuptools))) + (home-page "http://stanford.edu/~mwaskom/software/seaborn/") + (synopsis "Statistical data visualization") + (description + "Seaborn is a library for making attractive and informative statistical +graphics in Python. It is built on top of matplotlib and tightly integrated +with the PyData stack, including support for numpy and pandas data structures +and statistical routines from scipy and statsmodels.") + (license bsd-3))) + +(define-public python2-seaborn + (let ((seaborn (package-with-python2 python-seaborn))) + (package (inherit seaborn) + (propagated-inputs + `(("python2-pytz" ,python2-pytz) + ,@(package-propagated-inputs seaborn)))))) + +(define-public python-sympy + (package + (name "python-sympy") + (version "0.7.6") + (source + (origin + (method url-fetch) + (uri (string-append + "https://github.com/sympy/sympy/releases/download/sympy-" + version "/sympy-" version ".tar.gz")) + (sha256 + (base32 "19yp0gy4i7p4g6l3b8vaqkj9qj7yqb5kqy0qgbdagpzgkdz958yz")))) + (build-system python-build-system) + (native-inputs + `(("python-setuptools" ,python-setuptools))) + (home-page "http://www.sympy.org/") + (synopsis "Python library for symbolic mathematics") + (description + "SymPy is a Python library for symbolic mathematics. It aims to become a +full-featured computer algebra system (CAS) while keeping the code as simple +as possible in order to be comprehensible and easily extensible.") + (license bsd-3))) + +(define-public python2-sympy + (package-with-python2 python-sympy)) + (define-public python-testlib (package (name "python-testlib") @@ -3606,3 +3793,37 @@ applications.") (define-public python2-waf (package-with-python2 python-waf)) + +(define-public python-pyzmq + (package + (name "python-pyzmq") + (version "14.6.0") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/p/pyzmq/pyzmq-" + version ".tar.gz")) + (sha256 + (base32 "1frmbjykvhmdg64g7sn20c9fpamrsfxwci1nhhg8q7jgz5pq0ikp")))) + (build-system python-build-system) + (arguments + `(#:configure-flags + (list (string-append "--zmq=" (assoc-ref %build-inputs "zeromq"))) + ;; FIXME: You must build pyzmq with 'python setup.py build_ext + ;; --inplace' for 'python setup.py test' to work. + #:tests? #f)) + (inputs + `(("zeromq" ,zeromq))) + (native-inputs + `(("pkg-config" ,pkg-config) + ("python-nose" ,python-nose) + ("python-setuptools" ,python-setuptools))) + (home-page "http://github.com/zeromq/pyzmq") + (synopsis "Python bindings for 0MQ") + (description + "PyZMQ is the official Python binding for the ZeroMQ messaging library.") + (license bsd-4))) + +(define-public python2-pyzmq + (package-with-python2 python-pyzmq)) |