diff options
Diffstat (limited to 'gnu/packages/python-xyz.scm')
| -rw-r--r-- | gnu/packages/python-xyz.scm | 125 |
1 files changed, 110 insertions, 15 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 9fac87648a..f0490f248c 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -67,6 +67,7 @@ ;;; Copyright © 2019 Giacomo Leidi <goodoldpaul@autistici.org> ;;; Copyright © 2019 Wiktor Żelazny <wzelazny@vurv.cz> ;;; Copyright © 2019 Tanguy Le Carrour <tanguy@bioneland.org> +;;; Copyright © 2019 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> ;;; ;;; This file is part of GNU Guix. ;;; @@ -15889,41 +15890,63 @@ append on old values. Partd excels at shuffling operations.") (define-public python2-partd (package-with-python2 python-partd)) +(define-public python-fsspec + (package + (name "python-fsspec") + (version "0.6.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "fsspec" version)) + (sha256 + (base32 + "1g9ba8v04s1nrh7pvzfm2md7ivl2mrz3hcq3y9d1a44gd62h17zj")))) + (build-system python-build-system) + (arguments '(#:tests? #f)) ; there are none + (home-page "https://github.com/intake/filesystem_spec") + (synopsis "File-system specification") + (description "The purpose of this package is to produce a template or +specification for a file-system interface, that specific implementations +should follow, so that applications making use of them can rely on a common +behavior and not have to worry about the specific internal implementation +decisions with any given backend.") + (license license:bsd-3))) + (define-public python-dask (package (name "python-dask") - (version "1.2.2") + (version "2.9.0") (source (origin (method url-fetch) (uri (pypi-uri "dask" version)) (sha256 - (base32 "0b29gvf96gmp20wicly3v3mhyc93zbm3mdv935fka6x0wax7cy2y")))) + (base32 "1w1hqr8vyx6ygwflj2737dcy0mmgvrc0s602gnny8pzlcbs9m76b")))) (build-system python-build-system) - ;; A single test out of 5000+ fails. This test is marked as xfail when - ;; pytest-xdist is used. (arguments `(#:phases (modify-phases %standard-phases - (add-after 'unpack 'disable-broken-test + (add-after 'unpack 'disable-broken-tests (lambda _ + ;; This test is marked as xfail when pytest-xdist is used. (substitute* "dask/tests/test_threaded.py" (("def test_interrupt\\(\\)" m) (string-append "@pytest.mark.skip(reason=\"Disabled by Guix\")\n" m))) - (when (which "python2") - ;; This test fails with recent Pandas: - ;; <https://github.com/dask/dask/issues/3794>. - (substitute* "dask/dataframe/tests/test_dataframe.py" - (("def test_info\\(\\)" m) - (string-append "@pytest.mark.skip(reason=\"Disabled by Guix\")\n" - m)))) + ;; This one fails with a type error: + ;; TypeError: Already tz-aware, use tz_convert to convert. + (substitute* "dask/dataframe/tests/test_shuffle.py" + (("def test_set_index_timestamp\\(\\)" m) + (string-append "@pytest.mark.skip(reason=\"Disabled by Guix\")\n" + m))) #t)) (replace 'check (lambda _ (invoke "pytest" "-vv")))))) (propagated-inputs `(("python-cloudpickle" ,python-cloudpickle) + ("python-fsspec" ,python-fsspec) ("python-numpy" ,python-numpy) + ("python-packaging" ,python-packaging) ("python-pandas" ,python-pandas) ("python-partd" ,python-partd) ("python-toolz" ,python-toolz) @@ -15942,9 +15965,6 @@ larger-than-memory or distributed environments. These parallel collections run on top of the dynamic task schedulers. ") (license license:bsd-3))) -(define-public python2-dask - (package-with-python2 python-dask)) - (define-public python-ilinkedlist (package (name "python-ilinkedlist") @@ -16786,3 +16806,78 @@ services to what you expect in your tests.") (define-public python2-ujson (package-with-python2 python-ujson)) + +(define-public python-iocapture + ;; The latest release is more than a year older than this commit. + (let ((commit "fdc021c431d0840303908dfc3ca8769db383595c") + (revision "1")) + (package + (name "python-iocapture") + (version "0.1.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/oinume/iocapture.git") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1mkbhqibxvgwg0p7slr8dfraa3g2s6bsayladhax2jccwj4kcndz")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (delete 'check) + (add-after 'install 'check + (lambda* (#:key inputs outputs #:allow-other-keys) + (add-installed-pythonpath inputs outputs) + (invoke "py.test" "-v" "tests") + #t))))) + (propagated-inputs + `(("python-flexmock" ,python-flexmock) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-six" ,python-six))) + (home-page "https://github.com/oinume/iocapture") + (synopsis "Python capturing tool for stdout and stderr") + (description + "This package helps you to capture the standard out (stdout) and the +standard error channel (stderr) in your program.") + (license license:expat)))) + +(define-public python-argh + ;; There are 21 commits since the latest release containing important + ;; improvements. + (let ((commit "dcd3253f2994400a6a58a700c118c53765bc50a4") + (revision "1")) + (package + (name "python-argh") + (version (git-version "0.26.2" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/neithere/argh.git") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1p5h3dnpbsjmqrvil96s71asc6i3gpinmbrabqmwnrsxprz7r3ns")))) + (build-system python-build-system) + (propagated-inputs + `(("python-iocapture" ,python-iocapture) + ("python-mock" ,python-mock) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pytest-xdist" ,python-pytest-xdist) + ("python-tox" ,python-tox))) + (home-page "https://github.com/neithere/argh/") + (synopsis "Argparse wrapper with natural syntax") + (description + "python-argh is a small library that provides several layers of +abstraction on top of @code{python-argparse}. The layers can be mixed. It is +always possible to declare a command with the highest possible (and least +flexible) layer and then tune the behaviour with any of the lower layers +including the native API of @code{python-argparse}.") + (license license:lgpl3+)))) |