diff options
Diffstat (limited to 'gnu/packages/python-xyz.scm')
| -rw-r--r-- | gnu/packages/python-xyz.scm | 280 |
1 files changed, 252 insertions, 28 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 019cc7664c..397d15c99b 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -548,14 +548,13 @@ concepts.") (define-public python-cftime (package (name "python-cftime") - (version "1.0.3.4") + (version "1.0.4.2") (source (origin (method url-fetch) (uri (pypi-uri "cftime" version)) (sha256 - (base32 - "0362dhxbzk593walyjz30dll6y2y79wialik647cbwdsf3ad0x6x")))) + (base32 "0w0gi6jnch38hiygl62j4xkcirv4y3dcwrvxl9p7bsk6j27lzihs")))) (build-system python-build-system) (propagated-inputs `(("python-numpy" ,python-numpy))) @@ -934,14 +933,14 @@ add the log levels NOTICE, SPAM, SUCCESS and VERBOSE.") (define-public python-coloredlogs (package (name "python-coloredlogs") - (version "7.3") + (version "10.0") (source (origin (method url-fetch) (uri (pypi-uri "coloredlogs" version)) (sha256 (base32 - "1blcann6dyg5dhps9pg12rn0q0rjrlajpmmil0gy0j4cbvnl2il9")))) + "0dkw6xp0r1dwgz4s2f58npx5nxfq51wf4l6qkm5ib27slgfs4sdq")))) (build-system python-build-system) (arguments `(;Tests require some updated modules @@ -1158,13 +1157,13 @@ human-friendly syntax.") (define-public python-pandas (package (name "python-pandas") - (version "0.24.2") + (version "0.25.2") (source (origin (method url-fetch) (uri (pypi-uri "pandas" version)) (sha256 - (base32 "18imlm8xbhcbwy4wa957a1fkamrcb0z988z006jpfda3ki09z4ag")))) + (base32 "1gp2pvzdiakvgjmykdzdlzrsfbg4vjm49jjdl9s0ha0a3yfs34fa")))) (build-system python-build-system) (arguments `(#:modules ((guix build utils) @@ -1227,10 +1226,22 @@ structures designed to make working with structured (tabular, multidimensional, potentially heterogeneous) and time series data both easy and intuitive. It aims to be the fundamental high-level building block for doing practical, real world data analysis in Python.") + (properties `((python2-variant . ,(delay python2-pandas)))) (license license:bsd-3))) +;; Pandas 0.24.x are the last versions that support Python 2. (define-public python2-pandas - (package-with-python2 python-pandas)) + (let ((pandas (package-with-python2 + (strip-python2-variant python-pandas)))) + (package/inherit + pandas + (version "0.24.2") + (source (origin + (method url-fetch) + (uri (pypi-uri "pandas" version)) + (sha256 + (base32 + "18imlm8xbhcbwy4wa957a1fkamrcb0z988z006jpfda3ki09z4ag"))))))) (define-public python2-mechanize (package @@ -3451,7 +3462,7 @@ between language specification and implementation aspects.") (define-public python-numpy (package (name "python-numpy") - (version "1.15.4") + (version "1.17.3") (source (origin (method url-fetch) @@ -3460,7 +3471,7 @@ between language specification and implementation aspects.") version "/numpy-" version ".tar.gz")) (sha256 (base32 - "102vcl2qq4pjbm7a3d67vkkvn4466ngia1d8wi5avqwqh8j0jvkn")))) + "1ak9dmjja0q90a7fsxli51ypcwssh8c4pb6f8wkrsnf2xgdk6dy9")))) (build-system python-build-system) (inputs `(("openblas" ,openblas) @@ -3525,10 +3536,24 @@ with Python. It contains among other things: a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran code, useful linear algebra, Fourier transform, and random number capabilities.") + (properties `((python2-variant . ,(delay python2-numpy)))) (license license:bsd-3))) +;; Numpy 1.16.x are the last versions that support Python 2. (define-public python2-numpy - (package-with-python2 python-numpy)) + (let ((numpy (package-with-python2 + (strip-python2-variant python-numpy)))) + (package/inherit + numpy + (version "1.16.5") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/numpy/numpy/releases/download/v" + version "/numpy-" version ".tar.gz")) + (sha256 + (base32 + "0lg1cycxzi4rvvrd5zxinpdz0ni792fpx6xjd75z1923zcac8qrb"))))))) ;; NOTE: NumPy 1.8 is packaged only for Python 2 because it is of ;; interest only for legacy code going back to NumPy's predecessor @@ -5218,13 +5243,13 @@ releases.") (define-public python-pathpy (package (name "python-pathpy") - (version "11.5.0") + (version "11.5.1") (source (origin (method url-fetch) (uri (pypi-uri "path.py" version)) (sha256 - (base32 "1jxkf91syzxlpiwgm83fjfz1m5xh3jrvv4iyl5wjsnkk599pls5n")))) + (base32 "0ir9j1haq2jbi7aip6k2fa9l7q1l03k4hp1awxhjhcwzsnwp3ll8")))) (outputs '("out" "doc")) (build-system python-build-system) (propagated-inputs @@ -5625,13 +5650,13 @@ computing.") (define-public python-ipython (package (name "python-ipython") - (version "7.5.0") + (version "7.9.0") (source (origin (method url-fetch) (uri (pypi-uri "ipython" version ".tar.gz")) (sha256 - (base32 "09mbxq37mfn88xjnib7qfzaq9krr7gf1jxwy1p6mcjr254082h78")))) + (base32 "103jkw18z7fnwdal1mdbijjxi1fndzn31g887lmj7ddpf2r07lyz")))) (build-system python-build-system) (propagated-inputs `(("python-backcall" ,python-backcall) @@ -5964,15 +5989,20 @@ the GObject Introspection bindings to libnotify for non-GTK applications.") (define-public python-lxml (package (name "python-lxml") - (version "4.2.5") + (version "4.4.1") (source (origin (method url-fetch) (uri (pypi-uri "lxml" version)) (sha256 (base32 - "0zw0y9hs0nflxhl9cs6ipwwh53szi3w2x06wl0k9cylyqac0cwin")))) + "14jnpfcpgqr9sx8ppd286jzcbk0b36hbqsvd8jkvffipzw5v8768")))) (build-system python-build-system) + (arguments + `(#:phases (modify-phases %standard-phases + (replace 'check + (lambda _ + (invoke "make" "test")))))) (inputs `(("libxml2" ,libxml2) ("libxslt" ,libxslt))) @@ -7243,21 +7273,23 @@ Supported netlink families and protocols include: (define-public python-xlrd (package (name "python-xlrd") - (version "1.0.0") + (version "1.2.0") (source (origin (method url-fetch) (uri (pypi-uri "xlrd" version)) (sha256 (base32 - "0s8hjiz01vbhy85xalrz0qlsmd9ypf36zjqrf97hh984spapvy0g")))) + "1ci93fda4n67qhdvfl16zasyxrpygzk53hs6m8z0rd4dxrnb6vjl")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases - ;; Current test in setup.py does not work as of 1.0.0, so use nose to - ;; run tests instead for now. - (replace 'check (lambda _ (invoke "nosetests")))))) - (native-inputs `(("python-nose" ,python-nose))) + ;; Some tests depend on writing a temporary file to the user's home + ;; directory. + (add-after 'unpack 'fix-tests + (lambda _ + (delete-file "tests/test_open_workbook.py") + #t))))) (home-page "http://www.python-excel.org/") (synopsis "Library for extracting data from Excel files") (description "This package provides a library to extract data from @@ -9558,6 +9590,7 @@ useful for solving the Assignment Problem.") (base32 "10qsqdjpbc85fykc1vgcs8xwbgn4l2l52c8d83xf1q59pwyn79bw")))) (build-system python-build-system) + (arguments '(#:tests? #f)) ; Test invocation is no longer supported by Python. (native-inputs `(("python-pytest" ,python-pytest))) (home-page "https://bitbucket.org/mchaput/whoosh") @@ -10588,16 +10621,16 @@ Wikipedia code samples at (define-public python-cleo (package (name "python-cleo") - (version "0.6.1") + (version "0.6.8") (source (origin (method url-fetch) (uri (pypi-uri "cleo" version)) (sha256 (base32 - "0q1cf0szr0d54am4pypzwdnm74zpladdsinad94c2fz5i06fdpf7")))) + "06zp695hq835rkaq6irr1ds1dp2qfzyf32v60vxpd8rcnxv319l5")))) (build-system python-build-system) (native-inputs - `(;; For testing + `( ;; For testing ("python-mock" ,python-mock) ("python-pytest-mock" ,python-pytest-mock) ("python-pytest" ,python-pytest))) @@ -10615,6 +10648,191 @@ docstring and colored output.") (define-public python2-cleo (package-with-python2 python-cleo)) +(define-public python-tomlkit + (package + (name "python-tomlkit") + (version "0.5.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "tomlkit" version)) + (sha256 + (base32 + "18820ga5z3if1w8dvykxrfm000akracq01ic402xrbljgbn5grn4")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page + "https://github.com/sdispater/tomlkit") + (synopsis "Style preserving TOML library") + (description + "TOML Kit is a 0.5.0-compliant TOML library. It includes a parser that +preserves all comments, indentations, whitespace and internal element ordering, +and makes them accessible and editable via an intuitive API. It can also +create new TOML documents from scratch using the provided helpers. Part of the +implementation as been adapted, improved and fixed from Molten.") + (license license:expat))) + +(define-public python-shellingham + (package + (name "python-shellingham") + (version "1.3.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "shellingham" version)) + (sha256 + (base32 + "1q7kws7w4x2hji3g7y0ni9ddk4sd676ylrb3db54gbpys6xj6nwq")))) + (build-system python-build-system) + (home-page + "https://github.com/sarugaku/shellingham") + (synopsis "Tool to detect surrounding shell") + (description + "Shellingham detects what shell the current Python executable is +running in.") + (license license:isc))) + +(define-public python-memcached + (package + (name "python-memcached") + (version "1.59") + (source + (origin + (method url-fetch) + (uri (pypi-uri "python-memcached" version)) + (sha256 + (base32 + "0kvyapavbirk2x3n1jx4yb9nyigrj1s3x15nm3qhpvhkpqvqdqm2")))) + (build-system python-build-system) + (propagated-inputs `(("python-six" ,python-six))) + (home-page + "https://github.com/linsomniac/python-memcached") + (synopsis "Pure python memcached client") + (description + "This software is a pure Python interface to the memcached memory cache +daemon. It is the client side software which allows storing values in one or +more, possibly remote, memcached servers.") + (license license:psfl))) + +(define-public python-clikit + (package + (name "python-clikit") + (version "0.2.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "clikit" version)) + (sha256 + (base32 + "0dc8czib5f4j9px1ivcpqnmivnx2zjpc0xb00ldrhsqylks7r06n")))) + (build-system python-build-system) + (propagated-inputs + `(("python-pastel" ,python-pastel) + ("python-pylev" ,python-pylev))) + (home-page "https://github.com/sdispater/clikit") + (synopsis "Group of utilities to build command line interfaces") + (description + "CliKit is a group of utilities to build testable command line +interfaces.") + (license license:expat))) + +(define-public python-msgpack-python + (package + (name "python-msgpack-python") + (version "0.5.6") + (source + (origin + (method url-fetch) + (uri (pypi-uri "msgpack-python" version)) + (sha256 + (base32 + "16wh8qgybmfh4pjp8vfv78mdlkxfmcasg78lzlnm6nslsfkci31p")))) + (build-system python-build-system) + (home-page "http://msgpack.org/") + (synopsis "Package to deserialize messages in MessagePack binary format") + (description + "MessagePack is an efficient binary serialization format. It lets you +exchange data among multiple languages like JSON. But it's faster and +smaller. Small integers are encoded into a single byte, and typical short +strings require only one extra byte in addition to the strings themselves.") + (license license:asl2.0))) + +(define-public python-cachy + (package + (name "python-cachy") + (version "0.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "cachy" version)) + (sha256 + (base32 + "0v6mjyhgx6j7ya20bk69cr3gdzdkdf6psay0h090rscclgji65dp")))) + (build-system python-build-system) + (native-inputs + `(("python-fakeredis" ,python-fakeredis) + ("python-flexmock" ,python-flexmock) + ("python-pytest" ,python-pytest))) + (propagated-inputs + `(("python-memcached" ,python-memcached) + ("python-msgpack-python" ,python-msgpack-python) + ("python-redis" ,python-redis))) + (home-page "https://github.com/sdispater/cachy") + (synopsis "Simple yet effective caching library") + (description + "Cachy provides a simple yet effective caching library. A simple but +powerful API: thread-safety; decorator syntax; support for memcached, redis, +database, file, dict stores. Cachy supports python versions 2.7+ and 3.2+.") + (license license:expat))) + +(define-public poetry + (package + (name "poetry") + (version "0.12.17") + ;; Poetry can only be built from source with poetry. + (source + (origin + (method url-fetch) + (uri (pypi-uri "poetry" version)) + (sha256 + (base32 + "0gxwcd65qjmzqzppf53x51sic1rbcd9py6cdzx3aprppipimslvf")))) + (build-system python-build-system) + (arguments + `(#:tests? #f ;; Pypi does not have tests. + #:phases + (modify-phases %standard-phases + (replace 'build + (lambda _ + ;; Bug in poetry https://github.com/sdispater/poetry/issues/866. + (invoke "sed" "-i" "-e" "s/from distutils.core/from setuptools/" + "setup.py") + #t))))) + (propagated-inputs + `(("python-cachecontrol" ,python-cachecontrol) + ("python-cachy" ,python-cachy) + ("python-cleo" ,python-cleo) + ("python-glob2" ,python-glob2) + ("python-html5lib" ,python-html5lib) + ("python-jsonschema" ,python-jsonschema) + ("python-msgpack" ,python-msgpack) + ("python-pathlib2" ,python-pathlib2) + ("python-pkginfo" ,python-pkginfo) + ("python-pyparsing" ,python-pyparsing) + ("python-pyrsistent" ,python-pyrsistent) + ("python-requests" ,python-requests) + ("python-requests-toolbelt" ,python-requests-toolbelt) + ("python-shellingham" ,python-shellingham) + ("python-tomlkit" ,python-tomlkit) + ("python-virtualenv" ,python-virtualenv))) + (home-page "https://poetry.eustace.io/") + (synopsis "Python dependency management and packaging made easy") + (description "Poetry is a tool for dependency management and packaging +in Python. It allows you to declare the libraries your project depends on and +it will manage (install/update) them for you.") + (license license:expat))) + (define-public python-lazy-object-proxy (package (name "python-lazy-object-proxy") @@ -14325,14 +14543,20 @@ such as figshare or Zenodo.") (define-public python-pyro4 (package (name "python-pyro4") - (version "4.75") + (version "4.77") (source (origin (method url-fetch) (uri (pypi-uri "Pyro4" version)) (sha256 - (base32 "1dfpp36imddx19yv0kd28gk1l71ckhpqy6jd590wpm2680jw15rq")))) + (base32 "0gsjg869y4gpy265s1gj1f2qy6jn5iz8r2bwwnq78r1r5yi15zib")))) (build-system python-build-system) + (arguments + '(#:tests? #f)) ;FIXME: Some tests require network access. + (native-inputs + `(("python-cloudpickle" ,python-cloudpickle) + ("python-dill" ,python-dill) + ("python-msgpack" ,python-msgpack))) (propagated-inputs `(("python-serpent" ,python-serpent))) (home-page "https://pyro4.readthedocs.io") |