diff options
Diffstat (limited to 'gnu/packages/python-xyz.scm')
| -rw-r--r-- | gnu/packages/python-xyz.scm | 611 |
1 files changed, 485 insertions, 126 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 71727ad1da..e6d84932a6 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -51,7 +51,7 @@ ;;; Copyright © 2018 Mathieu Lirzin <mthl@gnu.org> ;;; Copyright © 2018 Adam Massmann <massmannak@gmail.com> ;;; Copyright © 2016, 2018 Tomáš Čech <sleep_walker@gnu.org> -;;; Copyright © 2018 Nicolas Goaziou <mail@nicolasgoaziou.fr> +;;; Copyright © 2018, 2019 Nicolas Goaziou <mail@nicolasgoaziou.fr> ;;; Copyright © 2018 Oleg Pykhalov <go.wigust@gmail.com> ;;; Copyright © 2018 Clément Lassieur <clement@lassieur.org> ;;; Copyright © 2018, 2019 Maxim Cournoyer <maxim.cournoyer@gmail.com> @@ -483,6 +483,8 @@ concepts.") (modify-phases %standard-phases (replace 'check (lambda _ + ;; XXX: A Python 2 test fails when HOME=/homeless-shelter. + (setenv "HOME" "/tmp") (invoke "python" "sh.py" "test")))))) (native-inputs `(("python-coverage" ,python-coverage))) @@ -622,24 +624,27 @@ version identifier.") (define-public python-serpent (package (name "python-serpent") - (version "1.27") + (version "1.28") (source (origin (method url-fetch) (uri (pypi-uri "serpent" version)) (sha256 - (base32 - "04p9dsrm5pv8vhk3flvih55kgvlzpi38hlaykdiakddmgwqw93bg")))) + (base32 "1arnckykpkvv2qrp49l1k7q5mr5pisswl0rvdx98x8wsl1n361pk")))) (build-system python-build-system) + (native-inputs + `(("python-attrs" ,python-attrs) + ("python-pytz" ,python-pytz))) (home-page "https://github.com/irmen/Serpent") (synopsis "Serializer for literal Python expressions") (description - "Serpent provides ast.literal_eval() compatible object tree -serialization. It serializes an object tree into bytes (utf-8 encoded string) -that can be decoded and then passed as-is to ast.literal_eval() to rebuild it -as the original object tree. As such it is safe to send serpent data to other -machines over the network for instance (because only safe literals are -encoded).") + "Serpent provides @code{ast.literal_eval()}-compatible object tree +serialization. It serializes an object tree into bytes (an utf-8 encoded +string) that can be decoded and then passed as-is to @code{ast.literal_eval()} +to rebuild the original object tree. + +Because only safe literals are encoded, it is safe to send serpent data to +other machines, such as over the network.") (license license:expat))) (define-public python-setuptools @@ -896,7 +901,7 @@ of @code{xmlfile}.") (define-public python-openpyxl (package (name "python-openpyxl") - (version "2.6.0") + (version "2.6.2") (source (origin ;; We use the upstream repository, as the tests are not included in the @@ -907,8 +912,7 @@ of @code{xmlfile}.") (changeset version))) (file-name (string-append name "-" version "-checkout")) (sha256 - (base32 - "1x47ngn7ybaqdbvg90c8h2x0j6yfdfj25gjfinp2w5rf62gsany7")))) + (base32 "1qhij6kcvdxqjy4g6193nsv4q7fy8n4fwyd3c2z047idlm6s3j4w")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases @@ -1729,6 +1733,37 @@ from git information. (define-public python2-pbr (package-with-python2 python-pbr)) +(define-public python-pyrsistent + (package + (name "python-pyrsistent") + (version "0.14.11") + (home-page "https://github.com/tobgu/pyrsistent") + (source (origin + (method url-fetch) + (uri (pypi-uri "pyrsistent" version)) + (sha256 + (base32 + "1qkh74bm296mp5g3r11lgsksr6bh4w1bf8pji4nmxdlfj542ga1w")))) + (build-system python-build-system) + (native-inputs + `(("python-hypothesis" ,python-hypothesis) + ("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner))) + (propagated-inputs + `(("python-six" ,python-six))) + (synopsis "Persistent data structures for Python") + (description + "Pyrsistent is a number of persistent collections (by some referred to as +functional data structures). Persistent in the sense that they are immutable. + +All methods on a data structure that would normally mutate it instead return a +new copy of the structure containing the requested updates. The original +structure is left untouched.") + (license license:expat))) + +(define-public python2-pyrsistent + (package-with-python2 python-pyrsistent)) + (define-public python-exif-read (package (name "python-exif-read") @@ -1899,21 +1934,28 @@ between Julian dates and Gregorian dates.") (define-public python-jsonschema (package (name "python-jsonschema") - (version "2.6.0") + (version "3.0.1") (source (origin (method url-fetch) (uri (pypi-uri "jsonschema" version)) (sha256 (base32 - "00kf3zmpp9ya4sydffpifn0j0mzm342a2vzh82p6r0vh10cg7xbg")))) + "03g20i1xfg4qdlk4475pl4pp7y0h37g1fbgs5qhy678q9xb822hc")))) (build-system python-build-system) (arguments '(#:phases (modify-phases %standard-phases - (replace 'check (lambda _ (invoke "nosetests")))))) + (replace 'check + (lambda _ + (setenv "PYTHONPATH" (string-append ".:" (getenv "PYTHONPATH"))) + (invoke "trial" "jsonschema")))))) (native-inputs - `(("python-nose" ,python-nose) - ("python-vcversioner" ,python-vcversioner))) + `(("python-setuptools_scm" ,python-setuptools-scm) + ("python-twisted" ,python-twisted))) + (propagated-inputs + `(("python-attrs" ,python-attrs) + ("python-pyrsistent" ,python-pyrsistent) + ("python-six" ,python-six))) (home-page "https://github.com/Julian/jsonschema") (synopsis "Implementation of JSON Schema for Python") (description @@ -1925,11 +1967,9 @@ between Julian dates and Gregorian dates.") (let ((jsonschema (package-with-python2 (strip-python2-variant python-jsonschema)))) (package (inherit jsonschema) - (native-inputs - `(("python2-mock" ,python2-mock) - ,@(package-native-inputs jsonschema))) (propagated-inputs - `(("python2-functools32" ,python2-functools32)))))) + `(("python2-functools32" ,python2-functools32) + ,@(package-propagated-inputs jsonschema)))))) (define-public python-schema (package @@ -2638,6 +2678,292 @@ and several other projects.") (define-public python2-guzzle-sphinx-theme (package-with-python2 python-guzzle-sphinx-theme)) +(define-public python-bumpversion + (package + (name "python-bumpversion") + (version "0.5.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "bumpversion" version)) + (sha256 + (base32 + "0zn7694yfipxg35ikkfh7kvgl2fissha3dnqad2c5bvsvmrwhi37")))) + (build-system python-build-system) + (home-page "https://github.com/peritus/bumpversion") + (synopsis "Tool to bump software version") + (description "This tool provides a command-line interface (CLI) to bump a +software version simply.") + (license license:expat))) + +(define-public python-deprecated + (package + (name "python-deprecated") + (version "1.2.5") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/tantale/deprecated.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "14909glxxwwc4b9qpz2b9jdriwzi5n65ichw85xqppap5f79wcwz")))) + (build-system python-build-system) + (arguments + `(#:phases (modify-phases %standard-phases + (replace 'check + (lambda _ + (invoke "pytest")))))) + (propagated-inputs + `(("python-wrapt" ,python-wrapt))) + (native-inputs + `(("python-bumpversion" ,python-bumpversion) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-sphinx" ,python-sphinx) + ("python-tox" ,python-tox))) + (home-page "https://github.com/tantale/deprecated") + (synopsis "Python decorator to deprecate classes, functions or methods") + (description "The @code{deprecated} decorator provides a convenient way to deprecate +to deprecate classes, functions or methods.") + (license license:expat))) + +(define-public python-pygithub + (package + (name "python-pygithub") + (version "1.43.7") + (source + ;; We fetch from the Git repo because there are no tests in the PyPI + ;; archive. + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/PyGithub/PyGithub.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0ww92zz0ja9w6rw83vphmn8rwmcn6abg16j4q7zxjc0rrg2cfj9i")))) + (build-system python-build-system) + (arguments + `(#:phases (modify-phases %standard-phases + ;; Some tests rely on the network. + (add-after 'unpack 'disable-failing-tests + (lambda _ + (substitute* "tests/Issue142.py" + (("testDecodeJson") "disabled_testDecodeJson")) + #t)) + (add-before 'check 'prepare-for-tests + (lambda _ + (for-each (lambda (f) + (chmod f #o666)) + (find-files "./tests")) + (system* "python" "-m" "lib2to3" "-w" "-n" "tests") + (setenv "PYTHONPATH" + (string-append "./tests:" (getenv "PYTHONPATH"))) + #t))))) + (propagated-inputs + `(("python-deprecated" ,python-deprecated) + ("python-pyjwt" ,python-pyjwt) + ("python-requests" ,python-requests))) + (native-inputs `(("python-httpretty" ,python-httpretty))) + (home-page "https://pygithub.readthedocs.io/en/latest/") + (synopsis "Python library for the GitHub API") + (description "This library allows managing GitHub resources such as +repositories, user profiles, and organizations in your Python applications, +using version 3 of the GitHub application programming interface (API).") + (license license:lgpl3+))) + +(define-public python-rellu + (package + (name "python-rellu") + (version "0.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "rellu" version)) + (sha256 + (base32 + "1w0arpj1sm7vh29nrbnca4pnp8sx42l07r17inwqcjjf9bhng66x")))) + (build-system python-build-system) + (propagated-inputs + `(("python-invoke" ,python-invoke) + ("python-pygithub" ,python-pygithub))) + (home-page "https://github.com/robotframework/rellu") + (synopsis "Utilities to create PyPI releases") + (description "This collection of utilities contains tooling and templates +to assist in creating releases on GitHub and publishing them on PyPI. It is +designed to be used by Robot Framework and tools and libraries in its +ecosystem, but can naturally be used also by other projects.") + (license license:asl2.0))) + +(define-public python-robotframework + (package + (name "python-robotframework") + (version "3.1.1") + ;; There are no tests in the PyPI archive. + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/robotframework/robotframework.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1aaiamc9l35m5sf7xl2qc5q9308v7sz3p1qgzcslsjxzddphyn4v")) + (patches (search-patches + "python-robotframework-honor-source-date-epoch.patch")))) + (build-system python-build-system) + (arguments + `(#:phases (modify-phases %standard-phases + (add-before 'build 'build-and-install-doc + (lambda* (#:key outputs #:allow-other-keys) + (let* ((doc-output (assoc-ref outputs "doc")) + (doc (string-append doc-output "/share/" + ,name "-" ,version "/"))) + (invoke "invoke" "library-docs" "all") + (mkdir-p doc) + (copy-recursively "doc/libraries" + (string-append doc "/libraries")) + #t))) + (replace 'check + (lambda _ + (invoke "python" "utest/run.py")))))) + (native-inputs + `(("python-invoke" ,python-invoke) + ("python-rellu" ,python-rellu) + ("python:tk" ,python "tk"))) ;used when building the HTML doc + (outputs '("out" "doc")) + (home-page "https://robotframework.org") + (synopsis "Generic automation framework") + (description "Robot Framework is a generic automation framework for +acceptance testing, acceptance test driven development (ATDD), and robotic +process automation (RPA).") + (license license:asl2.0))) + +(define-public python-robotframework-lint + ;; There is no properly tagged release; the commit below seems to correspond + ;; to the 0.9 stable release available from PyPI. The tests are not + ;; included in the PyPI archive, so we fetch the sources from the upstream + ;; Git repo. + (let ((commit "e851879bab1f63e4e53b34a4dc8a67ed95102830") + (revision "1")) + (package + (name "python-robotframework-lint") + (version (git-version "0.9.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/boakley/robotframework-lint.git") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1p6fknqg5sb9qz5857ji4a877657vgfjm5v3zn45994parx6ml1m")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (invoke "python" "-m" "robot" "-A" + "tests/conf/default.args" "tests")))))) + (propagated-inputs + `(("python-robotframework" ,python-robotframework))) + (home-page "https://github.com/boakley/robotframework-lint/") + (synopsis "Static analysis tool (linter) for Robot Framework") + (description "This package provides the @code{rflint} command-line +utility, a static analysis tool (linter) for Robot Framework source files.") + (license license:asl2.0)))) + +(define-public python-robotframework-sshlibrary + (package + (name "python-robotframework-sshlibrary") + (version "3.3.0") + ;; There are no tests in the PyPI archive. + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/robotframework/SSHLibrary.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1mk6dz2jqqndbx4yji09012q6rmadnqdywi7czvj62b0s07dr3r2")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'build 'build-and-install-doc + (lambda* (#:key outputs #:allow-other-keys) + (let* ((doc-output (assoc-ref outputs "doc")) + (doc (string-append doc-output "/share/" + ,name "-" ,version "/"))) + (invoke "chmod" "-R" "+w" "docs") + (invoke "invoke" "kw-docs" "project-docs") + (mkdir-p doc) + (for-each delete-file (find-files "docs" "\\.rst")) + (copy-recursively "docs" doc) + #t))) + (replace 'check + (lambda _ + ;; Some tests require an SSH server; we remove them. + (delete-file "utest/test_client_api.py") + (delete-file "utest/test_scp.py") + (invoke "python" "utest/run.py")))))) + (propagated-inputs + `(("python-robotframework" ,python-robotframework) + ("python-paramiko" ,python-paramiko) + ("python-scp" ,python-scp))) + (native-inputs + `(("openssh" ,openssh) + ("which" ,which) + ;; To generate the documentation + ("python-docutils" ,python-docutils) + ("python-invoke" ,python-invoke) + ("python-pygments" ,python-pygments) + ("python-rellu" ,python-rellu))) + (outputs '("out" "doc")) + (home-page "https://github.com/robotframework/SSHLibrary") + (synopsis "Robot Framework library for SSH and SFTP") + (description "SSHLibrary is a Robot Framework library providing support +for SSH and SFTP. It has the following main usages: +@itemize @bullet +@item Executing commands on the remote machine, either blocking or non-blocking. +@item Writing and reading in an interactive shell. +@item Transferring files and directories over SFTP. +@item Ensuring that files and directories exist on the remote machine. +@end itemize") + (license license:asl2.0))) + +(define-public python-scp + (package + (name "python-scp") + (version "0.13.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "scp" version)) + (sha256 + (base32 + "1crlpw9lnn58fs1c1rmh7s7s9y5gkgpgjsqlvg9qa51kq1knx7gg")))) + (build-system python-build-system) + (arguments + '(#:tests? #f)) ;tests require an SSH server + (propagated-inputs + `(("python-paramiko" ,python-paramiko))) + (home-page "https://github.com/jbardin/scp.py") + (synopsis "SCP protocol module for Python and Paramiko") + (description "The scp module extends the Paramiko library to send and +receive files via the SCP1 protocol, as implemented by the OpenSSH +@command{scp} program.") + (license license:gpl2+))) + (define-public python-rst.linker (package (name "python-rst.linker") @@ -2772,14 +3098,14 @@ Server (PLS).") (define-public python-language-server (package (name "python-language-server") - (version "0.25.0") + (version "0.26.1") (source (origin (method url-fetch) (uri (pypi-uri "python-language-server" version)) (sha256 (base32 - "1xabnaqd4n72myrc3mxl2y33vr2p7c9c5a87n77p9k327ckvdx01")))) + "1vs9ckfmm534n1hq3m871916wsjvi5h4gyj6wlzg13ck6506lx0s")))) (build-system python-build-system) (propagated-inputs `(("python-pluggy" ,python-pluggy) @@ -3356,24 +3682,16 @@ color scales, and color space conversion easy. It has support for: (define-public python-pygit2 (package (name "python-pygit2") - (version "0.27.4") + (version "0.28.0") (source (origin (method url-fetch) (uri (pypi-uri "pygit2" version)) (sha256 - (base32 - "15c1mhwwjc7nr8hn5gm21hcfhw61jmwb0vngpjhlm3y5565wg2pz")))) + (base32 "0lngsaz029d4fjcwhl17pr59nh9gwl6hwfin36nph60fgsmfdg3d")))) (build-system python-build-system) (arguments - '(#:tests? #f; tests don't run correctly in our environment - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'fix-dependency-versioning - (lambda _ - (substitute* "setup.py" - (("<") "<=")) - #t))))) + '(#:tests? #f)) ; tests don't run correctly in our environment (propagated-inputs `(("python-six" ,python-six) ("python-cffi" ,python-cffi) @@ -4460,13 +4778,13 @@ memoizing PEG/Packrat parser in Python.") (version "0.13.0") (source (origin - (method url-fetch) - (uri (string-append - "https://github.com/pygridtools/gridmap/archive/v" - version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/pygridtools/gridmap.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 - (base32 "1gzjg2k6f14i1msm2b0ax8d9ds1hvk6qd5nlaivg8m4cxqp4cp1x")))) + (base32 "1478lbwsr1w24cii2x01m2910fvh8r43ghnb78nc972a96hqiknm")))) (build-system python-build-system) (arguments '(#:tests? #f)) ; FIXME: Requires python-cherrypy. @@ -4491,13 +4809,13 @@ cluster without needing to write any wrapper code yourself.") (version "1.0.1") (source (origin - (method url-fetch) - (uri (string-append - "https://github.com/nickstenning/honcho/archive/v" - version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/nickstenning/honcho.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 - (base32 "0zizn61n5z5hq421hkypk9pw8s6fpxw30f4hsg7k4ivwzy3gjw9j")))) + (base32 "11bd87474qpif20xdcn0ra1idj5k16ka51i658wfpxwc6nzsn92b")))) (build-system python-build-system) (native-inputs `(("python-pytest" ,python-pytest) @@ -5648,7 +5966,7 @@ It is written entirely in Python.") (synopsis "Backport of additions to the 'collections.abc' module") (description "Python-backports-abc provides a backport of additions to the -'collections.abc' module in Python-3.5.") +@code{collections.abc} module in Python-3.5.") (license license:psfl))) (define-public python2-backports-abc @@ -6038,14 +6356,14 @@ Python.") (define-public python-markdown (package (name "python-markdown") - (version "3.0.1") + (version "3.1") (source (origin (method url-fetch) (uri (pypi-uri "Markdown" version)) (sha256 (base32 - "0z6v8649sr434d5r5zmrhydka7v7f9yas4bwcgkcs0650jdhybnh")))) + "0l62x154r9mgdvfap06gf0nkrmjd7xixlfshsxcdif2nlrlnyjpw")))) (build-system python-build-system) (native-inputs `(("python-nose" ,python-nose) @@ -6616,14 +6934,14 @@ versions of Python.") (define-public python-idna (package (name "python-idna") - (version "2.7") + (version "2.8") (source (origin (method url-fetch) (uri (pypi-uri "idna" version)) (sha256 (base32 - "05jam7d31767dr12x0rbvvs8lxnpb1mhdb2zdlfxgh83z6k3hjk8")))) + "01rlkigdxg17sf9yar1jl8n18ls59367wqh59hnawlyg53vb6my3")))) (build-system python-build-system) (home-page "https://github.com/kjd/idna") (synopsis "Internationalized domain names in applications") @@ -6713,14 +7031,15 @@ Python Package Index (PyPI).") (name "python-tlsh") (version "3.4.5") (home-page "https://github.com/trendmicro/tlsh") - (source (origin - (method url-fetch) - (uri (string-append "https://github.com/trendmicro/tlsh/archive/v" - version ".tar.gz")) - (sha256 - (base32 - "1x1vahd4zg5kpyr9h9hs3fvh460p25rjy4cclwdnbbw8x3vc30q3")) - (file-name (string-append name "-" version ".tar.gz")))) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/trendmicro/tlsh.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1ydliir308xn4ywy705mmsh7863ldlixdvpqwdhbipzq9vfpmvll")))) (build-system cmake-build-system) (arguments '(#:out-of-source? #f @@ -6838,7 +7157,9 @@ Python's @code{ctypes} foreign function interface (FFI).") (string-append "'" file "/lib/libmagic.so'"))) #t)))))) (inputs `(("file" ,file))) - (self-native-input? #f) + (native-inputs (if (%current-target-system) + `(("self" ,this-package)) + '())) (synopsis "Python bindings to the libmagic file type guesser. Note that this module and the python-magic module both provide a \"magic.py\" file; these two modules, which are different and were developed separately, both @@ -9354,23 +9675,19 @@ format.") (define-public python-twisted (package (name "python-twisted") - (version "17.5.0") + (version "19.2.0") (source (origin (method url-fetch) (uri (pypi-uri "Twisted" version ".tar.bz2")) (sha256 (base32 - "1sh2h23nnizcdyrl2rn7zxijglikxwz7z7grqpvq496zy2aa967i")))) + "1gmb8d57s13d8znvqnxi47vqzqz141z443dbxg9wjkp8ia9f220p")))) (build-system python-build-system) (arguments '(#:tests? #f)) ; FIXME: Some tests are failing. - ;; #:phases - ;; (modify-phases %standard-phases - ;; (replace 'check - ;; (lambda _ - ;; (zero? (system* "./bin/trial" "twisted"))))) (propagated-inputs `(("python-zope-interface" ,python-zope-interface) + ("python-pyhamcrest" ,python-pyhamcrest) ("python-incremental" ,python-incremental) ("python-hyperlink" ,python-hyperlink) ("python-constantly" ,python-constantly) @@ -10204,20 +10521,21 @@ discovery, monitoring and configuration.") (name "python-schematics") (version "1.1.1") (source - (origin - (method url-fetch) - (uri (string-append - "https://github.com/schematics/schematics/archive/v" version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 - "19v1i69bf3bzarfxmbv0v6ivpcn758x3shvbiy9l2hy0lvqwnp6l")))) + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/schematics/schematics.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0xdqskycznqc7mfp60bhw1zq8wx7yx1dvmbq3brnm1dx3xnqa0zd")))) (build-system python-build-system) (propagated-inputs `(("python-six" ,python-six))) (arguments - `(#:tests? #f)) ; requires a bunch of not very nice packages with fixed - ; version requirements (eg python-coveralls) + ;; The tests require a bunch of not very nice packages with fixed + ;; version requirements (e.g. python-coveralls). + `(#:tests? #f)) (home-page "https://github.com/schematics/schematics") (synopsis "Python Data Structures for Humans") (description "Python Data Structures for Humans.") @@ -10307,12 +10625,12 @@ Python to manipulate OpenDocument 1.2 files.") (description "Natsort lets you apply natural sorting on lists instead of lexicographical. If you use the built-in @code{sorted} method in python -on a list such as @code{['a20', 'a9', 'a1', 'a4', 'a10']}, it would be -returned as @code{['a1', 'a10', 'a20', 'a4', 'a9']}. Natsort provides a -function @code{natsorted} that identifies numbers and sorts them separately -from strings. It can also sort version numbers, real numbers, mixed types -and more, and comes with a shell command @command{natsort} that exposes this -functionality in the command line.") +on a list such as @code{[@code{a20}, @code{a9}, @code{a1}, @code{a4}, +@code{a10}]}, it would be returned as @code{[@code{a1}, @code{a10}, @code{a20}, +@code{a4}, @code{a9}]}. Natsort provides a function @code{natsorted} that +identifies numbers and sorts them separately from strings. It can also sort +version numbers, real numbers, mixed types and more, and comes with a shell +command @command{natsort} that exposes this functionality in the command line.") (license license:expat) (properties `((python2-variant . ,(delay python2-natsort)))))) @@ -10804,16 +11122,17 @@ network.") (define-public python-xopen (package (name "python-xopen") - (version "0.3.3") + (version "0.5.0") (source (origin (method url-fetch) (uri (pypi-uri "xopen" version)) (sha256 (base32 - "1a0wbil552wsmklwd89ssmgz3pjd86qa9i7jh8wqb9wslc8a2qjr")) - (file-name (string-append name "-" version ".tar.gz")))) + "17xbrgi23l87yg6h0qcknssp2q812miiy33qw6v45v5gx0jwv5xh")))) (build-system python-build-system) + (propagated-inputs + `(("python-setuptools-scm" ,python-setuptools-scm))) (home-page "https://github.com/marcelm/xopen/") (synopsis "Open compressed files transparently") (description "This module provides an @code{xopen} function that works like @@ -11265,13 +11584,13 @@ instead of servers and network commands.") (define-public python-automat (package (name "python-automat") - (version "0.6.0") + (version "0.7.0") (source (origin (method url-fetch) (uri (pypi-uri "Automat" version)) (sha256 (base32 - "1a7nsrljysfmdqmpn2apfa1gg6rfah4y9sizvns8gb08rx7d07rw")))) + "03ivg70n3b1cbcd2zvjhk8y4kmqxcvhmili39lmgx09dza1qpmyb")))) (build-system python-build-system) ;; We disable the tests because they require python-twisted, while ;; python-twisted depends on python-automat. Twisted is optional, but the @@ -11298,13 +11617,13 @@ transducers).") (define-public python-m2r (package (name "python-m2r") - (version "0.1.12") + (version "0.2.1") (source (origin (method url-fetch) (uri (pypi-uri "m2r" version)) (sha256 (base32 - "1axrwnf425sz4qz3c0qc7yhhki4myzb8rki7pczcsgzznzmqdyxd")))) + "16gdm8i06jjmlpvckpfmlkr4693dh0vs192vgsqn84fsdkbbm45z")))) (build-system python-build-system) (propagated-inputs `(("python-docutils" ,python-docutils) @@ -12541,13 +12860,13 @@ Swagger 2.0).") (version "0.6.3") (source (origin - (method url-fetch) - (uri (string-append "https://github.com/rochacbruno/flasgger/archive/" - version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/rochacbruno/flasgger.git") + (commit version))) + (file-name (git-file-name name version)) (sha256 - (base32 - "1gqzlm0rb55fdpsy5ipkganlx9cnpi454fqyycr03jm22zql14ay")))) + (base32 "0yydxsyjnc0clbrjqb1n7587l6cdqvwdagwxk5hkx01qwdfbkvpn")))) (build-system python-build-system) (arguments `(#:phases @@ -13053,13 +13372,13 @@ executed more than a given number of times during a given period.") (version "0.3") (source (origin - (method url-fetch) - (uri (string-append "https://github.com/kovidgoyal/dukpy/archive/v" - version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/kovidgoyal/dukpy.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 - (base32 - "0pj39rfwlzivqm5hkrsza7gssg6ggpxlq5ivc8f3h7x5pfgc6y6c")))) + (base32 "13h21nqzasv4zj32xs61brmc106pr2cx243672crcmwxxnjgaxls")))) (build-system python-build-system) (home-page "https://github.com/kovidgoyal/dukpy") (synopsis "Run JavaScript in python") @@ -13508,11 +13827,12 @@ and works only with Python 2 and NumPy < 1.9.") (synopsis "Send files to the user's @file{~/Trash} directory") (description "This package provides a Python library to send files to the user's @file{~/Trash} directory.") + (properties `((python2-variant . ,(delay python2-send2trash)))) (license license:bsd-3))) (define-public python2-send2trash (package - (inherit (package-with-python2 python-send2trash)) + (inherit (package-with-python2 (strip-python2-variant python-send2trash))) (arguments (substitute-keyword-arguments (package-arguments python-send2trash) ((#:phases phases) @@ -13521,8 +13841,7 @@ user's @file{~/Trash} directory.") (lambda _ (setenv "PYTHONPATH" (string-append (getcwd) ":" (getenv "PYTHONPATH"))) - #t)))))) - (properties `((python2-variant . ,(delay python-send2trash)))))) + #t)))))))) (define-public python-yapf (package @@ -14125,16 +14444,15 @@ manager compatible with @code{asyncio}.") (package (name "python-glob2") (version "0.6") - (source (origin - (method url-fetch) - (uri (string-append - "https://github.com/miracle2k/python-glob2/archive/" - version - ".tar.gz")) - (sha256 - (base32 - "0ja168f0dz4kbz4m06dm0rd3acaypk6hjx2km541pw22y9s40mag")) - (file-name (string-append name "-" version ".tar.gz")))) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/miracle2k/python-glob2.git") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1lm1xz3k3l0k1c5bcp9hlzmi3gp5j8dl1k3xhpiq5mnm0xq6n163")))) (build-system python-build-system) (home-page "https://github.com/miracle2k/python-glob2/") (synopsis "Extended Version of the python buildin glob module") @@ -14346,7 +14664,7 @@ introspection.") (synopsis "File transport adapter for Requests") (description "Requests-File is a transport adapter for use with the Requests Python -library to allow local filesystem access via file:// URLs.") +library to allow local file system access via @code{file://} URLs.") (license license:asl2.0))) (define-public python2-requests-file @@ -14549,14 +14867,14 @@ tool).") (define-public python-anndata (package (name "python-anndata") - (version "0.6.9") + (version "0.6.18") (source (origin (method url-fetch) (uri (pypi-uri "anndata" version)) (sha256 (base32 - "1fh461xyyc7pcrjfgd013bdc2alf53r46ss3gfw3431mbb1gappi")))) + "03x83yjaccbqszj7x4fwwmpil0ai59yx64d1zmf2691za3j03w73")))) (build-system python-build-system) (propagated-inputs `(("python-h5py" ,python-h5py) @@ -14575,16 +14893,15 @@ object-oriented library such as @code{scikit-learn}.") (define-public python-dill (package (name "python-dill") - (version "0.2.8.2") + (version "0.2.9") (source (origin (method url-fetch) (uri (pypi-uri "dill" version)) (sha256 - (base32 - "1cymzn9fxwdy33h21zkk4gqgzvd25110hh3zdqnvnwa3p52c4kb2")))) + (base32 "0vwqyi6hyz2r29zydc78dqymkbc5y7gia16xcdh215cikxph9mpn")))) (build-system python-build-system) - ;; FIXME: The check phase fails with "don't know how to make test". + ;; FIXME: The check phase fails with "don't know how to make test from: …". (arguments '(#:tests? #f)) (home-page "https://pypi.org/project/dill") (synopsis "Serialize all of Python") @@ -14593,7 +14910,7 @@ and de-serializing Python objects to the majority of the built-in Python types. Dill provides the user the same interface as the @code{pickle} module, and also includes some additional features. In addition to pickling Python objects, @code{dill} provides the ability to save the state of an interpreter -session in a single command. Hence, it would be feasable to save a +session in a single command. Hence, it would be feasible to save a interpreter session, close the interpreter, ship the pickled file to another computer, open a new interpreter, unpickle the session and thus continue from the saved state of the original interpreter session.") @@ -14818,14 +15135,14 @@ append on old values. Partd excels at shuffling operations.") (define-public python-dask (package (name "python-dask") - (version "1.1.4") + (version "1.2.0") (source (origin (method url-fetch) (uri (pypi-uri "dask" version)) (sha256 (base32 - "1hrnfz4pzawikz9b622vjz2500n7hs25nz9msy1k8l4g7l2kr6ky")))) + "1y0dqcp72ixwblgway0jpvfirlxfcmwrjiivdq96firj1hw127sd")))) (build-system python-build-system) ;; A single test out of 5000+ fails. This test is marked as xfail when ;; pytest-xdist is used. @@ -15229,3 +15546,45 @@ and dates in \"human readable\" forms. For example, it would display (description "This is a collection of well-tested, simple modules and functions that aim to reduce boilerplate when working with data.") (license license:bsd-2))) + +(define-public python-annoy + (package + (name "python-annoy") + (version "1.15.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "annoy" version)) + (sha256 + (base32 + "1rxn6snn0r32r07g45hdjhh8aa1xzx6fjrm8g62d8vzp46z7rzrp")))) + (build-system python-build-system) + (native-inputs + `(("python-nose" ,python-nose))) + (home-page "https://github.com/spotify/annoy/") + (synopsis "Approximate nearest neighbors library") + (description + "Annoy is a C++ library with Python bindings to search for points in +space that are close to a given query point. It also creates large read-only +file-based data structures that are @code{mmap}ped into memory so that many +processes may share the same data.") + (license license:asl2.0))) + +(define-public python-sphinxcontrib-svg2pdfconverter + (package + (name "python-sphinxcontrib-svg2pdfconverter") + (version "0.1.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "sphinxcontrib-svg2pdfconverter" version)) + (sha256 + (base32 + "1abvbgkkii13q8nsb10r0gc5lm0p9iq1iwhfhakn5ifn6asa0183")))) + (build-system python-build-system) + (propagated-inputs + `(("python-sphinx" ,python-sphinx))) + (home-page "https://github.com/missinglinkelectronics/sphinxcontrib-svg2pdfconverter/releases") + (synopsis "Sphinx SVG to PDF converter extension") + (description "A Sphinx extension to convert SVG images to PDF in case the builder does not support +SVG images natively (e.g. LaTeX).") + (license license:bsd-3))) |