diff options
Diffstat (limited to 'gnu/packages/mpi.scm')
| -rw-r--r-- | gnu/packages/mpi.scm | 88 |
1 files changed, 75 insertions, 13 deletions
diff --git a/gnu/packages/mpi.scm b/gnu/packages/mpi.scm index 914f8e975e..5fde6efae4 100644 --- a/gnu/packages/mpi.scm +++ b/gnu/packages/mpi.scm @@ -5,7 +5,7 @@ ;;; Copyright © 2016 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2017 Dave Love <fx@gnu.org> ;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il> -;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2018 Paul Garlick <pgarlick@tourbillion-technology.com> ;;; Copyright © 2019 Ricardo Wurmus <rekado@elephly.net> ;;; @@ -29,7 +29,9 @@ #:use-module ((guix licenses) #:hide (expat)) #:use-module (guix download) + #:use-module (guix git-download) #:use-module (guix utils) + #:use-module (guix deprecation) #:use-module (guix build-system gnu) #:use-module (guix build-system python) #:use-module (gnu packages) @@ -129,11 +131,11 @@ a powerful programming interface to gather information about the hardware, bind processes, and much more.") (license bsd-3))) -(define-public hwloc-2.0 +(define-public hwloc-2 ;; Note: 2.0 isn't the default yet, see above. (package (inherit hwloc) - (version "2.0.3") + (version "2.1.0") (source (origin (method url-fetch) (uri (string-append "https://www.open-mpi.org/software/hwloc/v" @@ -141,7 +143,7 @@ bind processes, and much more.") "/downloads/hwloc-" version ".tar.bz2")) (sha256 (base32 - "09f7ajak8wv5issr0hw72vs3jkldc7crcc7z5fd34sspkvrsm4z3")))) + "0qh8s7pphz0m5cwb7liqmc17xzfs23xhz5wn24r6ikvjyx99fhhr")))) ;; libnuma is no longer needed. (inputs (alist-delete "numactl" (package-inputs hwloc))) @@ -158,6 +160,9 @@ bind processes, and much more.") "-1")) #t)))))))) +(define-deprecated hwloc-2.0 'hwloc-2 + hwloc-2) + (define-public openmpi (package (name "openmpi") @@ -169,10 +174,11 @@ bind processes, and much more.") (version-major+minor version) "/downloads/openmpi-" version ".tar.bz2")) (sha256 - (base32 "0ms0zvyxyy3pnx9qwib6zaljyp2b3ixny64xvq3czv3jpr8zf2wh")))) + (base32 "0ms0zvyxyy3pnx9qwib6zaljyp2b3ixny64xvq3czv3jpr8zf2wh")) + (patches (search-patches "openmpi-psm2-priority.patch")))) (build-system gnu-build-system) (inputs - `(("hwloc" ,hwloc "lib") + `(("hwloc" ,hwloc-2 "lib") ("gfortran" ,gfortran) ("libfabric" ,libfabric) ("libevent" ,libevent) @@ -204,6 +210,12 @@ bind processes, and much more.") "--with-hwloc=external" "--with-libevent" + ;; Make sure ./configure fails if one of these is + ;; missing. + "--with-ucx" + "--with-psm" + "--with-psm2" + ;; InfiniBand support "--enable-openib-control-hdr-padding" "--enable-openib-dynamic-sl" @@ -338,17 +350,67 @@ only provides @code{MPI_THREAD_FUNNELED}."))) (setenv "OMPI_MCA_rmaps_base_mapping_policy" "core:OVERSUBSCRIBE") #t)) +(define-public intel-mpi-benchmarks + (package + (name "intel-mpi-benchmarks") + (version "2019.3") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/intel/mpi-benchmarks.git") + (commit (string-append "IMB-v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0si5xi6ilhd3w0gbsg124589pvp094hvf366rvjjb9pi7pdk5p4i")))) + (build-system gnu-build-system) + (arguments + '(#:phases (modify-phases %standard-phases + (delete 'configure) + (delete 'check) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (define (benchmark? file stat) + (and (string-prefix? "IMB-" (basename file)) + (executable-file? file))) + + (let* ((out (assoc-ref outputs "out")) + (bin (string-append out "/bin"))) + (for-each (lambda (file) + (install-file file bin)) + (find-files "." benchmark?)) + #t)))) + + ;; The makefile doesn't express all the dependencies, it seems. + #:parallel-build? #t + + #:make-flags (list (string-append "CC=" + (assoc-ref %build-inputs "openmpi") + "/bin/mpicc") + (string-append "CXX=" + (assoc-ref %build-inputs "openmpi") + "/bin/mpicxx")))) + (inputs + `(("openmpi" ,openmpi))) + (home-page "https://github.com/intel/mpi-benchmarks") + (synopsis "Benchmarks for the Message Passing Interface (MPI)") + (description + "Intel MPI Benchmarks (IMB) provides a set of elementary benchmarks that +conform with versions 1, 2, and 3 of the Message Passing Interface (MPI).") + (license + (fsf-free "https://directory.fsf.org/wiki/License:CPL-1.0" + "https://www.gnu.org/licenses/license-list.html#CommonPublicLicense10")))) + (define-public python-mpi4py (package (name "python-mpi4py") - (version "3.0.2") + (version "3.0.3") (source - (origin - (method url-fetch) - (uri (pypi-uri "mpi4py" version)) - (sha256 - (base32 - "1q28xl36difma1wq0acq111cqxjya32kn3lxp6fbidz3wg8jkmpq")))) + (origin + (method url-fetch) + (uri (pypi-uri "mpi4py" version)) + (sha256 + (base32 "07ssbhssv27rrjx1c5vd3vsr31vay5d8xcf4zh9yblcyidn72b81")))) (build-system python-build-system) (arguments `(#:phases |