diff options
Diffstat (limited to 'gnu/packages/mpi.scm')
| -rw-r--r-- | gnu/packages/mpi.scm | 38 |
1 files changed, 21 insertions, 17 deletions
diff --git a/gnu/packages/mpi.scm b/gnu/packages/mpi.scm index 6e56142bd1..0a43c55b7a 100644 --- a/gnu/packages/mpi.scm +++ b/gnu/packages/mpi.scm @@ -1,6 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2014, 2015, 2018 Eric Bavier <bavier@member.fsf.org> -;;; Copyright © 2014, 2015, 2016, 2017, 2018 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2014, 2015, 2018, 2019 Eric Bavier <bavier@member.fsf.org> +;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2014 Ian Denhardt <ian@zenhack.net> ;;; Copyright © 2016 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2017 Dave Love <fx@gnu.org> @@ -33,6 +33,7 @@ #:use-module (guix build-system python) #:use-module (gnu packages) #:use-module (gnu packages gcc) + #:use-module (gnu packages libevent) #:use-module (gnu packages linux) #:use-module (gnu packages pciutils) #:use-module (gnu packages xorg) @@ -40,6 +41,7 @@ #:use-module (gnu packages xml) #:use-module (gnu packages perl) #:use-module (gnu packages ncurses) + #:use-module (gnu packages parallel) #:use-module (gnu packages pkg-config) #:use-module (gnu packages valgrind) #:use-module (srfi srfi-1) @@ -156,7 +158,7 @@ bind processes, and much more.") (define-public openmpi (package (name "openmpi") - (version "3.0.1") + (version "4.0.0") (source (origin (method url-fetch) @@ -165,12 +167,13 @@ bind processes, and much more.") "/downloads/openmpi-" version ".tar.bz2")) (sha256 (base32 - "0pbqrm5faf57nasy1s81wqivl7zvxmv8lzjh8hvb0f3qxv8m0d36")))) + "0srnjwzsmyhka9hhnmqm86qck4w3xwjm8g6sbns58wzbrwv8l2rg")))) (build-system gnu-build-system) (inputs `(("hwloc" ,hwloc "lib") ("gfortran" ,gfortran) ("libfabric" ,libfabric) + ("libevent" ,libevent) ,@(if (and (not (%current-target-system)) (member (%current-system) (package-supported-systems psm))) `(("psm" ,psm)) @@ -180,7 +183,8 @@ bind processes, and much more.") `(("psm2" ,psm2)) '()) ("rdma-core" ,rdma-core) - ("valgrind" ,valgrind))) + ("valgrind" ,valgrind) + ("slurm" ,slurm))) ;for PMI support (launching via "srun") (native-inputs `(("pkg-config" ,pkg-config) ("perl" ,perl))) @@ -189,15 +193,15 @@ bind processes, and much more.") `(#:configure-flags `("--enable-mpi-ext=affinity" ;cr doesn't work "--enable-memchecker" "--with-sge" - - ;; VampirTrace is obsoleted by scorep and disabling - ;; it reduces the closure size considerably. - "--disable-vt" - - ,(string-append "--with-valgrind=" - (assoc-ref %build-inputs "valgrind")) - ,(string-append "--with-hwloc=" - (assoc-ref %build-inputs "hwloc"))) + "--with-psm" + "--with-psm2" + "--with-valgrind" + "--with-hwloc=external" + "--with-libevent" + ;; Enable support for SLURM's Process Manager + ;; Interface (PMI). + ,(string-append "--with-pmi=" + (assoc-ref %build-inputs "slurm"))) #:phases (modify-phases %standard-phases (add-before 'build 'remove-absolute (lambda _ @@ -212,8 +216,8 @@ bind processes, and much more.") (("_ABSOLUTE") "")) ;; Avoid valgrind (which pulls in gdb etc.). (substitute* - '("./ompi/mca/io/romio314/src/io_romio314_component.c") - (("MCA_io_romio314_COMPLETE_CONFIGURE_FLAGS") + '("./ompi/mca/io/romio321/src/io_romio321_component.c") + (("MCA_io_romio321_COMPLETE_CONFIGURE_FLAGS") "\"[elided to reduce closure]\"")) #t)) (add-before 'build 'scrub-timestamps ;reproducibility @@ -263,7 +267,7 @@ only provides @code{MPI_THREAD_FUNNELED}."))) (setenv "OMPI_MCA_plm_rsh_agent" (which "false")) ;; Allow oversubscription in case there are less physical cores available ;; in the build environment than the package wants while testing. - (setenv "OMPI_MCA_rmaps_base_oversubscribe" "yes") + (setenv "OMPI_MCA_rmaps_base_mapping_policy" "core:OVERSUBSCRIBE") #t)) (define-public python-mpi4py |