diff options
Diffstat (limited to 'gnu/packages/maths.scm')
| -rw-r--r-- | gnu/packages/maths.scm | 51 |
1 files changed, 51 insertions, 0 deletions
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 57d27a11d7..10b1e9be45 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -55,6 +55,7 @@ #:use-module (gnu packages gcc) #:use-module (gnu packages gd) #:use-module (gnu packages ghostscript) + #:use-module (gnu packages graphviz) #:use-module (gnu packages gtk) #:use-module (gnu packages image) #:use-module (gnu packages less) @@ -489,6 +490,56 @@ extremely large and complex data collections.") HDF5 file is encoded according to the HDF File Format Specification.") (license (license:x11-style "file://COPYING")))) +(define-public netcdf + (package + (name "netcdf") + (version "4.4.0") + (source + (origin + (method url-fetch) + (uri (string-append "ftp://ftp.unidata.ucar.edu/pub/netcdf/" + "netcdf-" version ".tar.gz")) + (sha256 + (base32 + "0y6gdcplarwqqnrav2xg1xd6ih732rzzbmdw78v3rl5b8mwcnh0d")) + (patches (list (search-patch "netcdf-config-date.patch"))))) + (build-system gnu-build-system) + (native-inputs + `(("m4" ,m4) + ("doxygen" ,doxygen) + ("graphviz" ,graphviz))) + (inputs + `(("hdf5" ,hdf5) + ("zlib" ,zlib))) + (arguments + `(#:configure-flags '("--enable-doxygen" "--enable-dot") + #:parallel-tests? #f)) ;various race conditions + (home-page "http://www.unidata.ucar.edu/software/netcdf/") + (synopsis "Library for scientific data") + (description "NetCDF is an interface for scientific data access and a +software library that provides an implementation of the interface. The netCDF +library defines a machine-independent format for representing scientific data. +Together, the interface, library, and format support the creation, access, and +sharing of scientific data.") + (license (license:x11-style "file://COPYRIGHT")))) + +(define-public netcdf-parallel-openmpi + (package (inherit netcdf) + (name "netcdf-parallel-openmpi") + (inputs + `(("mpi" ,openmpi) + ,@(alist-replace "hdf5" (list hdf5-parallel-openmpi) + (package-inputs netcdf)))) + ;; TODO: Replace pkg-config references in nc-config with absolute references + (arguments + (substitute-keyword-arguments (package-arguments netcdf) + ((#:configure-flags flags) + `(cons* "CC=mpicc" "CXX=mpicxx" + "--enable-parallel-tests" + ;; Shared libraries not supported with parallel IO. + "--disable-shared" "--with-pic" + ,flags)))))) + (define-public nlopt (package (name "nlopt") |