diff options
Diffstat (limited to 'gnu/packages/machine-learning.scm')
| -rw-r--r-- | gnu/packages/machine-learning.scm | 56 |
1 files changed, 36 insertions, 20 deletions
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 7bad833b38..30f005a331 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -26,6 +26,7 @@ #:use-module (guix svn-download) #:use-module (guix build-system cmake) #:use-module (guix build-system gnu) + #:use-module (guix build-system ocaml) #:use-module (guix build-system r) #:use-module (gnu packages) #:use-module (gnu packages autotools) @@ -35,6 +36,7 @@ #:use-module (gnu packages gcc) #:use-module (gnu packages image) #:use-module (gnu packages maths) + #:use-module (gnu packages ocaml) #:use-module (gnu packages perl) #:use-module (gnu packages pkg-config) #:use-module (gnu packages python) @@ -239,6 +241,39 @@ networks) based on simulation of (stochastic) flow in graphs.") ;; http://listserver.ebi.ac.uk/pipermail/mcl-users/2016/000376.html (license license:gpl3))) +(define-public ocaml-mcl + (package + (name "ocaml-mcl") + (version "12-068oasis4") + (source + (origin + (method url-fetch) + (uri (string-append + "https://github.com/fhcrc/mcl/archive/" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1l5jbhwjpsj38x8b9698hfpkv75h8hn3kj0gihjhn8ym2cwwv110")))) + (build-system ocaml-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'configure 'patch-paths + (lambda _ + (substitute* "configure" + (("SHELL = /bin/sh") (string-append "SHELL = "(which "sh")))) + (substitute* "setup.ml" + (("LDFLAGS=-fPIC") + (string-append "LDFLAGS=-fPIC\"; \"SHELL=" (which "sh")))) + #t))))) + (home-page "https://github.com/fhcrc/mcl") + (synopsis "OCaml wrappers around MCL") + (description + "This package provides OCaml bindings for the MCL graph clustering +algorithm.") + (license license:gpl3))) + (define-public randomjungle (package (name "randomjungle") @@ -402,7 +437,7 @@ sample proximities between pairs of cases.") (inputs `(("python" ,python) ("numpy" ,python-numpy) - ("r" ,r) + ("r-minimal" ,r-minimal) ("octave" ,octave) ("swig" ,swig) ("hdf5" ,hdf5) @@ -460,25 +495,6 @@ adaptive sparsity and the Wong algorithm for adaptively sparse gaussian geometric models.") (license license:lgpl3+))) -(define-public r-nnet - (package - (name "r-nnet") - (version "7.3-12") - (source - (origin - (method url-fetch) - (uri (cran-uri "nnet" version)) - (sha256 - (base32 - "17amqnw9dpap2w8ivx53hxha2xrm0drwfnj32li0xk41hlz548r7")))) - (build-system r-build-system) - (home-page "http://www.stats.ox.ac.uk/pub/MASS4/") - (synopsis "Feed-forward neural networks and multinomial log-linear models") - (description - "This package provides functions for feed-forward neural networks with a -single hidden layer, and for multinomial log-linear models.") - (license (list license:gpl2+ license:gpl3+)))) - (define-public r-kernlab (package (name "r-kernlab") |