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-rw-r--r--gnu/packages/databases.scm84
1 files changed, 9 insertions, 75 deletions
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 551b1bb9c6..150369a70c 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -10,7 +10,7 @@
;;; Copyright © 2015 Eric Dvorsak <eric@dvorsak.fr>
;;; Copyright © 2016 Hartmut Goebel <h.goebel@crazy-compilers.com>
;;; Copyright © 2016 Christopher Allan Webber <cwebber@dustycloud.org>
-;;; Copyright © 2015, 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2015, 2016, 2017, 2018, 2019 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016, 2017 Nils Gillmann <ng0@n0.is>
;;; Copyright © 2016, 2017, 2018 Roel Janssen <roel@gnu.org>
;;; Copyright © 2016 David Craven <david@craven.ch>
@@ -89,7 +89,6 @@
#:use-module (gnu packages readline)
#:use-module (gnu packages ruby)
#:use-module (gnu packages serialization)
- #:use-module (gnu packages statistics)
#:use-module (gnu packages tcl)
#:use-module (gnu packages terminals)
#:use-module (gnu packages textutils)
@@ -107,7 +106,6 @@
#:use-module (guix build-system python)
#:use-module (guix build-system ruby)
#:use-module (guix build-system cmake)
- #:use-module (guix build-system r)
#:use-module (guix build-system scons)
#:use-module ((guix build utils) #:hide (which))
#:use-module (guix utils)
@@ -917,66 +915,31 @@ organized in a hash table or B+ tree.")
(define-public recutils
(package
(name "recutils")
- (version "1.7")
+ (version "1.8")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnu/recutils/recutils-"
version ".tar.gz"))
(sha256
(base32
- "0cdwa4094x3yx7vn98xykvnlp9rngvd58d19vs3vh5hrvggccg93"))
- (modules '((guix build utils)))
- (snippet
- '(begin
- ;; Adjust the bundled gnulib to work with glibc 2.28. See e.g.
- ;; "m4-gnulib-libio.patch". This is a phase rather than patch
- ;; or snippet to work around <https://bugs.gnu.org/32347>.
- (substitute* (find-files "lib" "\\.c$")
- (("#if defined _IO_ftrylockfile")
- "#if defined _IO_EOF_SEEN"))
- (substitute* "lib/stdio-impl.h"
- (("^/\\* BSD stdio derived implementations")
- (string-append "#if !defined _IO_IN_BACKUP && defined _IO_EOF_SEEN\n"
- "# define _IO_IN_BACKUP 0x100\n"
- "#endif\n\n"
- "/* BSD stdio derived implementations")))
- #t))))
+ "14xiln4immfsw8isnvwvq0h23f6z0wilpgsc4qzabnrzb5lsx3nz"))))
(build-system gnu-build-system)
- ;; Running tests in parallel leads to test failures and crashes in
- ;; torture/utils.
- (arguments '(#:parallel-tests? #f
- #:configure-flags
+ (arguments '(#:configure-flags
(list (string-append "--with-bash-headers="
(assoc-ref %build-inputs "bash:include")
- "/include/bash"))
-
- #:phases (modify-phases %standard-phases
- (add-before 'build 'set-bash4.4-header-location
- (lambda _
- (substitute* "bash/Makefile.in"
- ;; Adjust the header search path for Bash
- ;; 4.4 in accordance with 'bash.pc'.
- (("AM_CPPFLAGS = (.*)$" _ rest)
- (string-append "AM_CPPFLAGS = "
- "-I$(BASH_HEADERS)/include "
- rest))
-
- ;; Install to PREFIX/lib/bash to match Bash
- ;; 4.4's search path.
- (("^libdir = .*$")
- "libdir = @libdir@/bash\n"))
- #t)))))
+ "/include/bash"))))
(native-inputs `(("emacs" ,emacs-minimal)
("bc" ,bc)
("bash:include" ,bash "include")
- ("libuuid" ,util-linux)))
+ ("check" ,check)
+ ("libuuid" ,util-linux)
+ ("pkg-config" ,pkg-config)))
;; TODO: Add more optional inputs.
(inputs `(("curl" ,curl)
- ("libgcrypt" ,libgcrypt)
- ("check" ,check)))
+ ("libgcrypt" ,libgcrypt)))
(synopsis "Manipulate plain text files as databases")
(description
"GNU Recutils is a set of tools and libraries for creating and
@@ -2271,35 +2234,6 @@ and web services platform functionality.")
(supported-systems '("x86_64-linux" "mips64el-linux" "aarch64-linux"))
(license license:gpl2)))
-(define-public r-rmysql
- (package
- (name "r-rmysql")
- (version "0.10.15")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "RMySQL" version))
- (sha256
- (base32
- "0bmc7w5fnkjaf333sgc0hskiy332m9gmfaxg0yzkjxscpizdw43n"))))
- (properties `((upstream-name . "RMySQL")))
- (build-system r-build-system)
- (native-inputs
- `(("pkg-config" ,pkg-config)))
- (inputs
- `(("mariadb" ,mariadb)
- ("zlib" ,zlib)))
- (propagated-inputs
- `(("r-dbi" ,r-dbi)))
- (home-page "https://github.com/r-dbi/RMySQL")
- (synopsis "Database interface and MySQL driver for R")
- (description
- "This package provides a DBI interface to MySQL / MariaDB. The RMySQL
-package contains an old implementation based on legacy code from S-PLUS which
-is being phased out. A modern MySQL client based on Rcpp is available from
-the RMariaDB package.")
- (license license:gpl2)))
-
(define-public python-ccm
(package
(name "python-ccm")