diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 476 |
1 files changed, 437 insertions, 39 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 5bf37e3900..cb0be4aedd 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -15,6 +15,7 @@ ;;; Copyright © 2018 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2018, 2019 Brett Gilio <brettg@posteo.net> ;;; Copyright © 2019 Nicolò Balzarotti <anothersms@gmail.com> +;;; Copyright © 2019 Wiktor Żelazny <wzelazny@vurv.cz> ;;; ;;; This file is part of GNU Guix. ;;; @@ -447,13 +448,13 @@ into a pipeline of data manipulation and visualisation.") (define-public r-httpuv (package (name "r-httpuv") - (version "1.5.1") + (version "1.5.2") (source (origin (method url-fetch) (uri (cran-uri "httpuv" version)) (sha256 (base32 - "042piypg4c8sqrlcdl3dwajkafkbglsky3x7d0jpjv8s5wxnpfxm")))) + "13ax0hs2lc39ilznh1zarwqdzahcbhb8adilrfik3xg0fkljpcwk")))) (build-system r-build-system) (propagated-inputs `(("r-bh" ,r-bh) @@ -796,6 +797,84 @@ extensive prebuilt widgets make it possible to build beautiful, responsive, and powerful applications with minimal effort.") (license license:artistic2.0))) +;; This package includes minified JavaScript files. When upgrading please +;; check that there are no new minified JavaScript files. +(define-public r-shinytree + (package + (name "r-shinytree") + (version "0.2.7") + (source + (origin + (method url-fetch) + (uri (cran-uri "shinyTree" version)) + (sha256 + (base32 + "0jfx2capckv7hf2yx3fn8i4rcmhi222ah91jnmhg497x8wgz31s3")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Delete minified JavaScript + (for-each delete-file + '("inst/www/jsTree-3.3.7/libs/require.js" + "inst/www/jsTree-3.3.7/libs/jquery.js" + "inst/www/jsTree-3.3.7/jstree.min.js")) + #t)))) + (properties `((upstream-name . "shinyTree"))) + (build-system r-build-system) + (arguments + `(#:modules ((guix build utils) + (guix build r-build-system) + (srfi srfi-1) + (ice-9 popen)) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'replace-minified-javascript + (lambda* (#:key inputs #:allow-other-keys) + (with-directory-excursion "inst/www/jsTree-3.3.7/" + (symlink (string-append (assoc-ref inputs "js-requirejs") + "/share/javascript/require.min.js") + "libs/require.js") + (call-with-values + (lambda () + (unzip2 + `((,(assoc-ref inputs "js-jquery") + "libs/jquery.js") + ("jstree.js" + "jstree.min.js")))) + (lambda (sources targets) + (for-each (lambda (source target) + (format #t "Processing ~a --> ~a~%" + source target) + (let ((minified (open-pipe* OPEN_READ "uglify-js" source))) + (call-with-output-file target + (lambda (port) + (dump-port minified port))))) + sources targets)))) + #t))))) + (propagated-inputs + `(("r-htmlwidgets" ,r-htmlwidgets) + ("r-jsonlite" ,r-jsonlite) + ("r-promises" ,r-promises) + ("r-shiny" ,r-shiny) + ("r-stringr" ,r-stringr))) + (inputs + `(("js-requirejs" ,js-requirejs))) + (native-inputs + `(("uglify-js" ,uglify-js) + ("js-jquery" + ,(origin + (method url-fetch) + (uri "https://code.jquery.com/jquery-3.3.1.js") + (sha256 + (base32 + "1b8zxrp6xwzpw25apn8j4qws0f6sr7qr7h2va5h1mjyfqvn29anq")))))) + (home-page "https://cran.r-project.org/web/packages/shinyTree/") + (synopsis "jsTree bindings for Shiny") + (description + "This package exposes R bindings to jsTree, a JavaScript library that +supports interactive trees, to enable rich, editable trees in Shiny.") + (license license:expat))) + (define-public r-shinydashboard (package (name "r-shinydashboard") @@ -867,6 +946,31 @@ this gives the user direct access to the file system without the need to well as file saving is available.") (license license:gpl2+))) +(define-public r-shinythemes + (package + (name "r-shinythemes") + (version "1.1.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "shinythemes" version)) + (sha256 + (base32 + "12miz44n2zxfswnia7p8dirxj3miw0aqn4pkx2111ikz67ax84rf")))) + (properties `((upstream-name . "shinythemes"))) + (build-system r-build-system) + (propagated-inputs `(("r-shiny" ,r-shiny))) + (home-page "http://rstudio.github.io/shinythemes/") + (synopsis "Themes for Shiny") + (description + "This package provides themes for use with Shiny. It includes several +Bootstrap themes, which are packaged for use with Shiny applications.") + ;; The package is released under version 3 of the GPL, but it includes + ;; source files that are covered by the Expat license. It also includes + ;; fonts under SIL or the ASL. + (license (list license:gpl3 license:expat + license:silofl1.1 license:asl2.0)))) + ;; The package sources include minified variants of d3.js and non-minified ;; source code of d3-jetpack. (define-public r-d3r @@ -1059,14 +1163,14 @@ work well on small screens.") (define-public r-feather (package (name "r-feather") - (version "0.3.3") + (version "0.3.5") (source (origin (method url-fetch) (uri (cran-uri "feather" version)) (sha256 (base32 - "0ls8lmygyjq60467s88h66d7fczjp1d3a2106rfq4dx9lyfvdfsa")))) + "1gxd0h2m56sjjlzn4dry6s13nddxc4l5i11gsvavaf2dwbahdzsh")))) (build-system r-build-system) (propagated-inputs `(("r-hms" ,r-hms) @@ -1649,14 +1753,14 @@ validation and filtering on the values, making options invisible or private.") (define-public r-circlize (package (name "r-circlize") - (version "0.4.7") + (version "0.4.8") (source (origin (method url-fetch) (uri (cran-uri "circlize" version)) (sha256 (base32 - "07y1bchkslpz2wl43yg5j5h1nl9z0i425a07jdmfd5avrynd8p3m")))) + "0jvr9hmxyhg0zx101iiqkrg8wfaj86kp62xpv42n2j9fkn5r1mi2")))) (build-system r-build-system) (propagated-inputs `(("r-colorspace" ,r-colorspace) @@ -2663,14 +2767,14 @@ Optimization problems by using the simplex algorithm.") (define-public r-geometry (package (name "r-geometry") - (version "0.4.3") + (version "0.4.4") (source (origin (method url-fetch) (uri (cran-uri "geometry" version)) (sha256 (base32 - "0z4491mhfmrlbb8lazjvq55alrprx7k0abg2d39fj0lsj84cls1r")))) + "1mx5n5mw63nij4n6crs9165mlls4fnh1ipw5ch467rjsidgl0mg8")))) (build-system r-build-system) (propagated-inputs `(("r-magic" ,r-magic) @@ -5569,14 +5673,14 @@ and adds the annotation to the plot.") (define-public r-ggpubr (package (name "r-ggpubr") - (version "0.2.2") + (version "0.2.3") (source (origin (method url-fetch) (uri (cran-uri "ggpubr" version)) (sha256 (base32 - "0r5knv3707pmpngmj60zn761y3bh8lj89dhh1b80ss083xnxr4qw")))) + "0i81mmz4qn9yzcgfa6dhkcrx4ddlflkm2c3b40isc8all43rm8rn")))) (build-system r-build-system) (propagated-inputs `(("r-cowplot" ,r-cowplot) @@ -6091,14 +6195,14 @@ other add-on packages.") (define-public r-insight (package (name "r-insight") - (version "0.4.1") + (version "0.5.0") (source (origin (method url-fetch) (uri (cran-uri "insight" version)) (sha256 (base32 - "1lw1r3mb97z5p9z25jfzlhs0sbnwp6v8kzysf0am01x4m7l3iz82")))) + "0lrh2l9n2zd9n3zzknsxz6nlasnrayx3bplxlz7m616g56gr5nfp")))) (build-system r-build-system) (home-page "https://easystats.github.io/insight/") (synopsis "Easy access to model information for various model objects") @@ -6117,14 +6221,14 @@ information are missing.") (define-public r-sjlabelled (package (name "r-sjlabelled") - (version "1.1.0") + (version "1.1.1") (source (origin (method url-fetch) (uri (cran-uri "sjlabelled" version)) (sha256 (base32 - "0rnmlwpp41h04dzfjd5ncvzjzs43slaimb4v2in1axznv3haafyc")))) + "0c9wy0gsr2sbkrv2638xbi7qm0gl6jyr6sfricavhkm7l4hljjkz")))) (build-system r-build-system) (propagated-inputs `(("r-haven" ,r-haven) @@ -6873,13 +6977,13 @@ and coverage methods to tune the choice of threshold.") (define-public r-ggformula (package (name "r-ggformula") - (version "0.9.1") + (version "0.9.2") (source (origin (method url-fetch) (uri (cran-uri "ggformula" version)) (sha256 - (base32 "01ngx8qh9lhmagng6abx2ky54zi3iyj5bpxlnw59slagwv7l6icx")))) + (base32 "16ycabhnp78fsiv1dc63ccgh9gmpsy2683vbmq0fdzl6w3pd87sr")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) @@ -7878,14 +7982,14 @@ Hothorn, Westfall, 2010, CRC Press).") (define-public r-emmeans (package (name "r-emmeans") - (version "1.4") + (version "1.4.1") (source (origin (method url-fetch) (uri (cran-uri "emmeans" version)) (sha256 (base32 - "1ynf9hhbch83k63lwps69ijfch30fk5v0sc418ck264c5vih26dh")))) + "1fpawaxnmj67md169a9mzrnnh2d0c973xydfg6hw865933jil9lq")))) (build-system r-build-system) (propagated-inputs `(("r-estimability" ,r-estimability) @@ -8036,14 +8140,14 @@ detection, parallelism through BLAS and parallel user templates.") (define-public r-sjstats (package (name "r-sjstats") - (version "0.17.5") + (version "0.17.6") (source (origin (method url-fetch) (uri (cran-uri "sjstats" version)) (sha256 (base32 - "1x9ybvz84vgaabmqp4z6crbv5q6kqjg6msk1spbr11zx9dbj06ca")))) + "11z1wfi0d74d1rld0320l3vmv6rl41wa0v9bjc44rk06yc90wld2")))) (build-system r-build-system) (propagated-inputs `(("r-bayestestr" ,r-bayestestr) @@ -8055,6 +8159,7 @@ detection, parallelism through BLAS and parallel user templates.") ("r-magrittr" ,r-magrittr) ("r-mass" ,r-mass) ("r-modelr" ,r-modelr) + ("r-parameters" ,r-parameters) ("r-performance" ,r-performance) ("r-purrr" ,r-purrr) ("r-rlang" ,r-rlang) @@ -8162,14 +8267,14 @@ effects models and Bayesian models.") (define-public r-ggeffects (package (name "r-ggeffects") - (version "0.11.0") + (version "0.12.0") (source (origin (method url-fetch) (uri (cran-uri "ggeffects" version)) (sha256 (base32 - "1b0lxa8bljdh6h4lk7pql1lrhjlvh7p5c8qlgb8ac6ay8hb79vmi")))) + "0idfycjk05gyykfp9ibmhxfcjvd01ikh1dl0fb4nqw6znw3ar0xp")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) @@ -8196,14 +8301,14 @@ results using @code{ggplot2}.") (define-public r-sjplot (package (name "r-sjplot") - (version "2.7.0") + (version "2.7.1") (source (origin (method url-fetch) (uri (cran-uri "sjPlot" version)) (sha256 (base32 - "1m0gy991fmxvqry91kkzdkdapyalhrwql25d0hg2a2naxgfw4zpk")))) + "14shypabpahf68hd66rb1dpqhiyl3i0yx1yc85wamdvljh9fdymb")))) (properties `((upstream-name . "sjPlot"))) (build-system r-build-system) (propagated-inputs @@ -9122,17 +9227,18 @@ Scientific.") (define-public r-activity (package (name "r-activity") - (version "1.2") + (version "1.3") (source (origin (method url-fetch) (uri (cran-uri "activity" version)) (sha256 (base32 - "11w2bz6p9xbzdh6773dmbbh6rws0h5dj18p8m0ivzizgq932vdzs")))) + "12imqj366dp6pam5gap6ji56p5wf1073xz5g4iikfxf5l8snxw92")))) (build-system r-build-system) (propagated-inputs `(("r-circular" ,r-circular) + ("r-insol" ,r-insol) ("r-pbapply" ,r-pbapply))) (home-page "https://cran.r-project.org/web/packages/activity/") (synopsis "Animal activity statistics") @@ -9444,14 +9550,14 @@ maps.") (define-public r-tidytree (package (name "r-tidytree") - (version "0.2.6") + (version "0.2.7") (source (origin (method url-fetch) (uri (cran-uri "tidytree" version)) (sha256 (base32 - "13mhizbsawmfqjpnzb73yw6kn1f1wlz0vhyzj3g0rj6ry880rw89")))) + "15ky7hj7w08jx94wm0yikckca0apwv3jy5svd77dpzgb2lr9ff9a")))) (build-system r-build-system) (propagated-inputs `(("r-ape" ,r-ape) @@ -10767,14 +10873,14 @@ This makes it a convenient and fast interface to C/C++ and Fortran code.") (define-public r-spam (package (name "r-spam") - (version "2.2-2") + (version "2.3-0") (source (origin (method url-fetch) (uri (cran-uri "spam" version)) (sha256 (base32 - "024dgfnjfxvsiymbzrhadinamj6qy509f4sbd1zxql8ymkyxn7vi")))) + "194n5mgvyms9ckjqixl3h33apii8h9kqspqg2si9k741k578qb3w")))) (build-system r-build-system) (propagated-inputs `(("r-dotcall64" ,r-dotcall64))) @@ -11152,14 +11258,14 @@ regression coefficients can be conducted via jackknifing.") (define-public r-huge (package (name "r-huge") - (version "1.3.2") + (version "1.3.3") (source (origin (method url-fetch) (uri (cran-uri "huge" version)) (sha256 (base32 - "1j93gvi1jyq3ld9jhdqhrpm2is54rk3ilmf3yw7fx6gva0y6hjqd")))) + "18f8w4hdp9fdi2k5ip6fnrn5z47w4ybgxs2m6a7jdvd2v4wfdr69")))) (build-system r-build-system) (propagated-inputs `(("r-igraph" ,r-igraph) @@ -12590,14 +12696,14 @@ barplots or heatmaps.") (define-public r-seqinr (package (name "r-seqinr") - (version "3.4-5") + (version "3.6-1") (source (origin (method url-fetch) (uri (cran-uri "seqinr" version)) (sha256 (base32 - "17zv0n5cji17izwmwg0jcbxbjl3w5rls91w15svcnlpxjms38ahn")))) + "0j30za6kji6y3v09cvcydiacnp65pv6ig8aw7cydl47l5s9chky4")))) (build-system r-build-system) (propagated-inputs `(("r-ade4" ,r-ade4) @@ -13607,14 +13713,14 @@ the XKCD web comic.") (define-public r-msigdbr (package (name "r-msigdbr") - (version "6.2.1") + (version "7.0.1") (source (origin (method url-fetch) (uri (cran-uri "msigdbr" version)) (sha256 (base32 - "1264j1hs74kq7hyh68vfynadfi6mdpq46qm1hnwzkzzhmbzpb9cg")))) + "19p8z617m3my8la7n1qgb1s2msf940r372im3q30qkbcx3qxg3sd")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) @@ -13881,14 +13987,14 @@ databases, including ENA, PDB or ChEMBL are also accessible.") (define-public r-ggraph (package (name "r-ggraph") - (version "1.0.2") + (version "2.0.0") (source (origin (method url-fetch) (uri (cran-uri "ggraph" version)) (sha256 (base32 - "0fpmp326mryd1k1qvacjadksrnhbla8h960i18lmrimzrag7692c")))) + "0qj7w3af0pgmd9mil6y571jikfkln7b8csvzg6b08spwbglfy1s3")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) @@ -13896,12 +14002,14 @@ databases, including ENA, PDB or ChEMBL are also accessible.") ("r-ggforce" ,r-ggforce) ("r-ggplot2" ,r-ggplot2) ("r-ggrepel" ,r-ggrepel) + ("r-graphlayouts" ,r-graphlayouts) ("r-gtable" ,r-gtable) ("r-igraph" ,r-igraph) ("r-mass" ,r-mass) - ("r-plyr" ,r-plyr) ("r-rcpp" ,r-rcpp) + ("r-rlang" ,r-rlang) ("r-scales" ,r-scales) + ("r-tidygraph" ,r-tidygraph) ("r-viridis" ,r-viridis))) (home-page "https://cran.r-project.org/web/packages/ggraph/") (synopsis "Implementation of grammar of graphics for graphs and networks") @@ -15212,3 +15320,293 @@ single cell integration, described in Korsunsky et al @url{doi.org/10.1101/461954}. The package includes a standalone Harmony function and interfaces to external frameworks.") (license license:gpl3)))) + +(define-public r-covr + (package + (name "r-covr") + (version "3.3.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "covr" version)) + (sha256 + (base32 + "0fvd7v53w11x6kaw61hbml8n1j2ck9l2fv2wvqdsg689xic9rqcs")))) + (properties `((upstream-name . "covr"))) + (build-system r-build-system) + (propagated-inputs + `(("r-crayon" ,r-crayon) + ("r-digest" ,r-digest) + ("r-httr" ,r-httr) + ("r-jsonlite" ,r-jsonlite) + ("r-rex" ,r-rex) + ("r-withr" ,r-withr) + ("r-yaml" ,r-yaml))) + (home-page "https://github.com/r-lib/covr") + (synopsis "Test coverage for R packages") + (description + "Thisp package enables you to track and report code coverage for your +package and (optionally) upload the results to a coverage service. Code +coverage is a measure of the amount of code being exercised by a set of tests. +It is an indirect measure of test quality and completeness. This package is +compatible with any testing methodology or framework and tracks coverage of +both R code and compiled C/C++/FORTRAN code.") + (license license:gpl3))) + +(define-public r-systemfonts + (package + (name "r-systemfonts") + (version "0.1.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "systemfonts" version)) + (sha256 + (base32 + "0m0ljid683xcam2f14x7k2zv1yx4npac38a3gfv11vhxfbnpgp0z")))) + (properties `((upstream-name . "systemfonts"))) + (build-system r-build-system) + (inputs + `(("fontconfig" ,fontconfig) + ("freetype" ,freetype) + ("zlib" ,zlib))) + (native-inputs + `(("pkg-config" ,pkg-config))) + (home-page "https://github.com/r-lib/systemfonts") + (synopsis "System native font finding") + (description + "This package provides system native access to the font catalogue. As +font handling varies between systems it is difficult to correctly locate +installed fonts across different operating systems. The 'systemfonts' package +provides bindings to the native libraries for finding font files that can then +be used further by e.g. graphic devices.") + (license license:expat))) + +(define-public r-graphlayouts + (package + (name "r-graphlayouts") + (version "0.5.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "graphlayouts" version)) + (sha256 + (base32 + "03dizbhhdhnzbj2i5zvqgs617kwcv4h2pha4f16adic0fph1rxl3")))) + (properties `((upstream-name . "graphlayouts"))) + (build-system r-build-system) + (propagated-inputs + `(("r-igraph" ,r-igraph) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo))) + (home-page "https://github.com/schochastics/graphlayouts") + (synopsis "Additional layout algorithms for network visualizations") + (description + "This package provides several layout algorithms to visualize networks +which are not part of the igraph library. Most are based on the concept of +stress majorization by Gansner et al. (2004) +<doi:10.1007/978-3-540-31843-9_25>. Some more specific algorithms allow to +emphasize hidden group structures in networks or focus on specific nodes.") + (license license:expat))) + +(define-public r-tidygraph + (package + (name "r-tidygraph") + (version "1.1.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "tidygraph" version)) + (sha256 + (base32 + "1zpsarm74afbc7p5dlyb0whc09670qdcddw1ckb25cfc9hfh0hjn")))) + (properties `((upstream-name . "tidygraph"))) + (build-system r-build-system) + (propagated-inputs + `(("r-dplyr" ,r-dplyr) + ("r-igraph" ,r-igraph) + ("r-magrittr" ,r-magrittr) + ("r-pillar" ,r-pillar) + ("r-r6" ,r-r6) + ("r-rcpp" ,r-rcpp) + ("r-rlang" ,r-rlang) + ("r-tibble" ,r-tibble) + ("r-tidyr" ,r-tidyr))) + (home-page "https://github.com/thomasp85/tidygraph") + (synopsis "Tidy API for graph manipulation") + (description + "This package provides a graph implementation that can be thought of as +two tidy data frames describing node and edge data respectively. It provides +an approach to manipulate these two virtual data frames using the API defined +in the @code{dplyr} package, and it also provides tidy interfaces to a lot of +common graph algorithms.") + (license license:expat))) + +(define-public r-soupx + (let ((commit "a3354be76fb52fd795be6ddf163cf056c05c6cb8") + (revision "1")) + (package + (name "r-soupx") + (version (git-version "0.3.1" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/constantAmateur/SoupX") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1zmlyzrl0fz6l79gn2wswid670p88mm3y292is89sa5p3h7frr99")))) + (properties `((upstream-name . "SoupX"))) + (build-system r-build-system) + (propagated-inputs + `(("r-ggplot2" ,r-ggplot2) + ("r-matrix" ,r-matrix) + ("r-seurat" ,r-seurat))) + (home-page "https://github.com/constantAmateur/SoupX") + (synopsis "Single cell mRNA Soup eXterminator") + (description + "This package provides a package for quantifying, profiling and +removing cell free mRNA contamination (the \"soup\") from droplet based single +cell RNA-seq experiments.") + (license license:gpl2)))) + +(define-public r-assertr + (package + (name "r-assertr") + (version "2.6") + (source + (origin + (method url-fetch) + (uri (cran-uri "assertr" version)) + (sha256 + (base32 + "0g4ii6vhp0155a29ljhs64a09x0nzy5ybvwwchhk4mkcgsvnvfkj")))) + (build-system r-build-system) + (propagated-inputs + `(("r-dplyr" ,r-dplyr) + ("r-mass" ,r-mass) + ("r-rlang" ,r-rlang))) + (native-inputs + `(("r-knitr" ,r-knitr))) ; needed for vignette + (home-page "https://github.com/ropensci/assertr") + (synopsis "Assertive programming for R analysis pipelines") + (description + "This package provides functionality to assert conditions that have to be +met so that errors in data used in analysis pipelines can fail quickly. It is +similar to @code{stopifnot()} but more powerful, friendly, and easier for use +in pipelines.") + (license license:expat))) + +(define-public r-parameters + (package + (name "r-parameters") + (version "0.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "parameters" version)) + (sha256 + (base32 + "12v301va1l3xydicbf0k04anxlmyjclbbjfg0riprryhkxwwk8g5")))) + (properties `((upstream-name . "parameters"))) + (build-system r-build-system) + (propagated-inputs + `(("r-bayestestr" ,r-bayestestr) + ("r-insight" ,r-insight))) + (home-page "https://cran.r-project.org/web/packages/parameters") + (synopsis "Processing of model parameters") + (description + "This package provides utilities for processing the parameters of various +statistical models. Beyond computing p values, CIs, and other indices for a +wide variety of models, this package implements features like standardization +or bootstrapping of parameters and models, feature reduction (feature +extraction and variable selection) as well as conversion between indices of +effect size.") + (license license:gpl3))) + +(define-public r-rgdal + (package + (name "r-rgdal") + (version "1.4-4") + (source + (origin + (method url-fetch) + (uri (cran-uri "rgdal" version)) + (sha256 + (base32 + "1my56hdc9x40ynxx1qwqwqxjvjxybmm00w4xg5gi8zgj19pffci5")))) + (properties `((upstream-name . "rgdal"))) + (build-system r-build-system) + (inputs + `(("gdal" ,gdal) + ("proj.4" ,proj.4) + ("zlib" ,zlib))) + (propagated-inputs + `(("r-sp" ,r-sp))) + (native-inputs + `(("pkg-config" ,pkg-config))) + (home-page "http://rgdal.r-forge.r-project.org") + (synopsis "Bindings for the Geospatial Data Abstraction Library") + (description + "This package provides bindings to the Geospatial Data Abstraction +Library (GDAL) and access to projection/transformation operations from the +PROJ.4 library.") + (license license:gpl2+))) + +(define-public r-insol + (package + (name "r-insol") + (version "1.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "insol" version)) + (sha256 + (base32 + "14ikz05375pjn9hby7kwkhcnykjilbnkdy5i8lsl7c5qdbhmqcm5")))) + (properties `((upstream-name . "insol"))) + (build-system r-build-system) + (propagated-inputs + `(("r-raster" ,r-raster) + ("r-rgdal" ,r-rgdal))) + (native-inputs + `(("gfortran" ,gfortran))) + (home-page "https://meteoexploration.com/R/insol/index.html") + (synopsis "Tools for calculating solar radiation") + (description + "This package provides functions to compute insolation on tilted +surfaces, computes atmospheric transmittance and related parameters such as: +Earth radius vector, declination, sunset and sunrise, daylength, equation of +time, vector in the direction of the sun, vector normal to surface, and some +atmospheric physics.") + (license license:gpl2+))) + +(define-public r-lifecycle + (package + (name "r-lifecycle") + (version "0.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "lifecycle" version)) + (sha256 + (base32 + "11rk7hkw63rfrf4aqmb4xrb88kg95xh8hajpjvjfwjym2v02h74n")))) + (properties `((upstream-name . "lifecycle"))) + (build-system r-build-system) + (propagated-inputs + `(("r-glue" ,r-glue) + ("r-rlang" ,r-rlang))) + (home-page "https://github.com/r-lib/lifecycle") + (synopsis "Manage the life cycle of your package functions") + (description + "Manage the life cycle of your exported functions with shared +conventions, documentation badges, and non-invasive deprecation warnings. The +lifecycle package defines four development stages (experimental, maturing, +stable, and questioning) and three deprecation stages (soft-deprecated, +deprecated, and defunct). It makes it easy to insert badges corresponding to +these stages in your documentation. Usage of deprecated functions are +signalled with increasing levels of non-invasive verbosity.") + (license license:gpl3))) |