diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 25 |
1 files changed, 20 insertions, 5 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4758ce3081..674301a30d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9100,6 +9100,19 @@ replacement for strverscmp.") ("python-numpy" ,python-numpy) ;; MultQC checks for the presence of nose at runtime. ("python-nose" ,python-nose))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "setup.py" + ;; MultiQC 1.5 ‘requires’ a version of python-matplotlib older + ;; than the one in Guix, but should work fine with 2.2.2. + ;; See <https://github.com/ewels/MultiQC/issues/725> and + ;; <https://github.com/ewels/MultiQC/issues/732> for details. + (("['\"]matplotlib.*?['\"]") + "'matplotlib'")) + #t))))) (home-page "http://multiqc.info") (synopsis "Aggregate bioinformatics analysis reports") (description @@ -11547,7 +11560,9 @@ browser.") (replace 'install (lambda* (#:key inputs outputs #:allow-other-keys) (let* ((target (assoc-ref outputs "out")) - (doc (string-append target "/share/doc/f-seq/"))) + (bin (string-append target "/bin")) + (doc (string-append target "/share/doc/f-seq")) + (lib (string-append target "/lib"))) (mkdir-p target) (mkdir-p doc) (substitute* "bin/linux/fseq" @@ -11556,11 +11571,11 @@ browser.") (string-append (assoc-ref inputs "java-commons-cli") "/share/java/commons-cli.jar")) (("REALDIR=.*") - (string-append "REALDIR=" target "/bin\n"))) + (string-append "REALDIR=" bin "\n"))) (install-file "README.txt" doc) - (install-file "bin/linux/fseq" (string-append target "/bin")) - (install-file "build~/fseq.jar" (string-append target "/lib")) - (copy-recursively "lib" (string-append target "/lib")) + (install-file "bin/linux/fseq" bin) + (install-file "build~/fseq.jar" lib) + (copy-recursively "lib" lib) #t)))))) (inputs `(("perl" ,perl) |