diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 38 |
1 files changed, 38 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 2d6251ac92..de25f8c7b5 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -234,6 +234,44 @@ gapped, local, and paired-end alignment modes.") (supported-systems '("x86_64-linux")) (license license:gpl3+))) +(define-public clipper + (package + (name "clipper") + (version "0.3.0") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/YeoLab/clipper/archive/" + version ".tar.gz")) + (sha256 + (base32 + "1q7jpimsqln7ic44i8v2rx2haj5wvik8hc1s2syd31zcn0xk1iyq")) + (modules '((guix build utils))) + (snippet + ;; remove unnecessary setup dependency + '(substitute* "setup.py" + (("setup_requires = .*") ""))))) + (build-system python-build-system) + (arguments `(#:python ,python-2)) ; only Python 2 is supported + (inputs + `(("htseq" ,htseq) + ("python-pybedtools" ,python2-pybedtools) + ("python-cython" ,python2-cython) + ("python-scikit-learn" ,python2-scikit-learn) + ("python-matplotlib" ,python2-matplotlib) + ("python-pysam" ,python2-pysam) + ("python-numpy" ,python2-numpy) + ("python-scipy" ,python2-scipy))) + (native-inputs + `(("python-mock" ,python2-mock) ; for tests + ("python-pytz" ,python2-pytz) ; for tests + ("python-setuptools" ,python2-setuptools))) + (home-page "https://github.com/YeoLab/clipper") + (synopsis "CLIP peak enrichment recognition") + (description + "CLIPper is a tool to define peaks in CLIP-seq datasets.") + (license license:gpl2))) + (define-public flexbar (package (name "flexbar") |