diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 16 |
1 files changed, 9 insertions, 7 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 73a1fe119b..6fcabb6f9e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13641,32 +13641,34 @@ fasta subsequences.") (define-public python-cooler (package (name "python-cooler") - (version "0.7.11") + (version "0.8.7") (source (origin (method url-fetch) (uri (pypi-uri "cooler" version)) (sha256 (base32 - "08k5nxnxa6qsbk15z5z0q01n28042k87wi4905hh95rzqib15mhx")))) + "01g6gqix9ba27sappz6nfyiwabzrlf8i5fn8kwcz8ra356cq9crp")))) (build-system python-build-system) (propagated-inputs - `(("python-biopython" ,python-biopython) + `(("python-asciitree" ,python-asciitree) + ("python-biopython" ,python-biopython) ("python-click" ,python-click) ("python-cytoolz" ,python-cytoolz) ("python-dask" ,python-dask) ("python-h5py" ,python-h5py) ("python-multiprocess" ,python-multiprocess) + ("python-numpy" ,python-numpy) ("python-pandas" ,python-pandas) ("python-pyfaidx" ,python-pyfaidx) ("python-pypairix" ,python-pypairix) ("python-pysam" ,python-pysam) - ("python-scipy" ,python-scipy))) + ("python-pyyaml" ,python-pyyaml) + ("python-scipy" ,python-scipy) + ("python-simplejson" ,python-simplejson))) (native-inputs `(("python-mock" ,python-mock) - ("python-nose" ,python-nose) - ("python-numpydoc" ,python-numpydoc) - ("python-sphinx" ,python-sphinx))) + ("python-pytest" ,python-pytest))) (home-page "https://github.com/mirnylab/cooler") (synopsis "Sparse binary format for genomic interaction matrices") (description |