diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 32 |
1 files changed, 20 insertions, 12 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b47f136935..b9d641ec34 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -97,7 +97,8 @@ #:use-module (gnu packages xml) #:use-module (gnu packages xorg) #:use-module (gnu packages zip) - #:use-module (srfi srfi-1)) + #:use-module (srfi srfi-1) + #:use-module (srfi srfi-26)) (define-public r-ape (package @@ -2094,7 +2095,7 @@ identify enrichments with functional annotations of the genome.") (define-public diamond (package (name "diamond") - (version "0.9.6") + (version "0.9.8") (source (origin (method url-fetch) (uri (string-append @@ -2103,7 +2104,7 @@ identify enrichments with functional annotations of the genome.") (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "1y8a10b695pvgn7kk2s87jdwbdf7iszpnr6139pw8ina1ajs4w8y")))) + "04f501vj3i95i2b4n60831k00ljalifrq33419bbz0y3sjlmcnj3")))) (build-system cmake-build-system) (arguments '(#:tests? #f ; no "check" target @@ -2718,19 +2719,26 @@ comment or quality sections.") ("zlib" ,zlib))) (build-system gnu-build-system) (arguments - `(#:make-flags '("FORCE_DYNAMIC=1") ; use shared libs + `(#:make-flags + '(,@(if (any (cute string-prefix? <> (or (%current-system) + (%current-target-system))) + '("x86_64" "mips64el" "aarch64")) + '("FORCE_DYNAMIC=1") ; use shared libs + '("FORCE_DYNAMIC=1" "FORCE_32BIT=1"))) #:phases (modify-phases %standard-phases (delete 'configure) (add-before 'build 'bin-mkdir - (lambda _ - (mkdir-p "bin"))) + (lambda _ + (mkdir-p "bin") + #t)) (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (let ((out (assoc-ref outputs "out"))) - (install-file "bin/gemma" - (string-append - out "/bin")))))) + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (install-file "bin/gemma" + (string-append + out "/bin"))) + #t))) #:tests? #f)) ; no tests included yet (home-page "https://github.com/xiangzhou/GEMMA") (synopsis "Tool for genome-wide efficient mixed model association") @@ -9527,7 +9535,7 @@ applications for tackling some common problems in a user-friendly way.") "TADbit is a complete Python library to deal with all steps to analyze, model, and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and -correct interaction matrices, identify adn compare the so-called +correct interaction matrices, identify and compare the so-called @dfn{Topologically Associating Domains} (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models.") |