diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 206 |
1 files changed, 76 insertions, 130 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f60fc4c84c..2d5ec6d170 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -51,6 +51,7 @@ #:use-module (gnu packages base) #:use-module (gnu packages bash) #:use-module (gnu packages bison) + #:use-module (gnu packages bioconductor) #:use-module (gnu packages boost) #:use-module (gnu packages check) #:use-module (gnu packages compression) @@ -1887,42 +1888,33 @@ other types of unwanted sequence from high-throughput sequencing reads.") (define-public libbigwig (package (name "libbigwig") - (version "0.1.4") + (version "0.4.2") (source (origin - (method url-fetch) - (uri (string-append "https://github.com/dpryan79/libBigWig/" - "archive/" version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/dpryan79/libBigWig.git") + (commit version))) + (file-name (string-append name "-" version "-checkout")) (sha256 (base32 - "098rjh35pi4a9q83n8wiwvyzykjqj6l8q189p1xgfw4ghywdlvw1")))) + "0h2smg24v5srdcqzrmz2g23cmlp4va465mgx8r2z571sfz8pv454")))) (build-system gnu-build-system) (arguments `(#:test-target "test" + #:tests? #f ; tests require access to the web #:make-flags (list "CC=gcc" (string-append "prefix=" (assoc-ref %outputs "out"))) #:phases (modify-phases %standard-phases - (delete 'configure) - (add-before 'check 'disable-curl-test - (lambda _ - (substitute* "Makefile" - (("./test/testRemote.*") "")) - #t)) - ;; This has been fixed with the upstream commit 4ff6959cd8a0, but - ;; there has not yet been a release containing this change. - (add-before 'install 'create-target-dirs - (lambda* (#:key outputs #:allow-other-keys) - (let ((out (assoc-ref outputs "out"))) - (mkdir-p (string-append out "/lib")) - (mkdir-p (string-append out "/include")) - #t)))))) + (delete 'configure)))) (inputs `(("zlib" ,zlib) ("curl" ,curl))) (native-inputs - `(("doxygen" ,doxygen))) + `(("doxygen" ,doxygen) + ;; Need for tests + ("python" ,python-2))) (home-page "https://github.com/dpryan79/libBigWig") (synopsis "C library for handling bigWig files") (description @@ -1933,13 +1925,13 @@ files.") (define-public python-pybigwig (package (name "python-pybigwig") - (version "0.2.5") + (version "0.3.12") (source (origin (method url-fetch) (uri (pypi-uri "pyBigWig" version)) (sha256 (base32 - "0yrpdxg3y0sny25x4w22lv1k47jzccqjmg7j4bp0hywklvp0hg7d")) + "00w4kfnm2c5l7wdwr2nj1z5djv8kzgf7h1zhsgv6njff1rwr26g0")) (modules '((guix build utils))) (snippet '(begin @@ -1955,6 +1947,8 @@ files.") (substitute* "setup.py" (("libs=\\[") "libs=[\"BigWig\", ")) #t))))) + (propagated-inputs + `(("python-numpy" ,python-numpy))) (inputs `(("libbigwig" ,libbigwig) ("zlib" ,zlib) @@ -6378,14 +6372,14 @@ exploration of the results.") (define-public r-annotationforge (package (name "r-annotationforge") - (version "1.22.0") + (version "1.22.2") (source (origin (method url-fetch) (uri (bioconductor-uri "AnnotationForge" version)) (sha256 (base32 - "12ffj7h95adiya5mzyjxazqn1qgr434ajpabfcyhrj5v83s4vk65")))) + "17kmy7nvpyyj6w5jyrjciw87rydmmmc8q6cnwqjv1j7li9bp09gr")))) (properties `((upstream-name . "AnnotationForge"))) (build-system r-build-system) @@ -6964,13 +6958,13 @@ Bioconductor, CRAN, and Github.") (define-public r-biocviews (package (name "r-biocviews") - (version "1.48.2") + (version "1.48.3") (source (origin (method url-fetch) (uri (bioconductor-uri "biocViews" version)) (sha256 (base32 - "01yiafayl1m5704xdd2cn3zjc78rs10dqyz66lr3qkf6d8w66938")))) + "1rxvwikqivsgxjjcazlszy8xgz346lfh5rw4llxw6fz38fjgb0k5")))) (properties `((upstream-name . "biocViews"))) (build-system r-build-system) @@ -7183,13 +7177,13 @@ utilities for sequence data management under the ACNUC system.") (define-public r-iranges (package (name "r-iranges") - (version "2.14.10") + (version "2.14.11") (source (origin (method url-fetch) (uri (bioconductor-uri "IRanges" version)) (sha256 (base32 - "10ccw930vfmkskkrzbps14xglqlkxf588623dr7f1a9ckx7yr2p6")))) + "0wz63hysspyjihqadg91dbvllc5a61zzjrsz0b9498lihqc6m1la")))) (properties `((upstream-name . "IRanges"))) (build-system r-build-system) @@ -7263,13 +7257,13 @@ names in their natural, rather than lexicographic, order.") (define-public r-edger (package (name "r-edger") - (version "3.22.2") + (version "3.22.3") (source (origin (method url-fetch) (uri (bioconductor-uri "edgeR" version)) (sha256 (base32 - "07py2g6vg9jbflwhc1hnzr2silbinrjwxq3mkq30nzjgf0n0hrf3")))) + "0w3jv29n0kkaiig8dbbdqy2dkng8xfaihch82mj9ci5hphrx3nng")))) (properties `((upstream-name . "edgeR"))) (build-system r-build-system) (propagated-inputs @@ -7291,13 +7285,13 @@ CAGE.") (define-public r-variantannotation (package (name "r-variantannotation") - (version "1.26.0") + (version "1.26.1") (source (origin (method url-fetch) (uri (bioconductor-uri "VariantAnnotation" version)) (sha256 (base32 - "06bccdf57vja7m63chmgc4539lwng3q3b8zxn285fj8524l6mcn7")))) + "1r55ki951dj81qvy73knfcy69ik5vzkd56wnk3f6vvf9vngqb8jr")))) (properties `((upstream-name . "VariantAnnotation"))) (inputs @@ -7329,13 +7323,13 @@ coding changes and predict coding outcomes.") (define-public r-limma (package (name "r-limma") - (version "3.36.1") + (version "3.36.3") (source (origin (method url-fetch) (uri (bioconductor-uri "limma" version)) (sha256 (base32 - "1982g5v35ilfgxm2vkq1p3j1bbir795pjvfzx4nzam2rlqqymbqm")))) + "0iiifszr6hcqih6kszdsbkx3gacfg3d7v8hdx0lbjqnjqgqz7pwk")))) (build-system r-build-system) (home-page "http://bioinf.wehi.edu.au/limma") (synopsis "Package for linear models for microarray and RNA-seq data") @@ -7384,13 +7378,13 @@ different technologies, including microarrays, RNA-seq, and quantitative PCR.") (define-public r-genomicranges (package (name "r-genomicranges") - (version "1.32.3") + (version "1.32.6") (source (origin (method url-fetch) (uri (bioconductor-uri "GenomicRanges" version)) (sha256 (base32 - "03gmka6rlz18vd4229796l5l3l6446v5cb90sn2nb5knjbp84hni")))) + "0p58yk2i5gqvjlkx548mnrr49wvs0xfcl06l9rqj2hi6hkkbvnp3")))) (properties `((upstream-name . "GenomicRanges"))) (build-system r-build-system) @@ -7495,13 +7489,13 @@ powerful online queries from gene annotation to database mining.") (define-public r-biocparallel (package (name "r-biocparallel") - (version "1.14.1") + (version "1.14.2") (source (origin (method url-fetch) (uri (bioconductor-uri "BiocParallel" version)) (sha256 (base32 - "00qg1kg2l9qqpyjaw5q910cmf84vwfiw1fhsx3ig784gwinwgj6n")))) + "1llb5a62hn4yxpdgqdh2l7i5zd06mjkk8hagsna69cq65wv6iifm")))) (properties `((upstream-name . "BiocParallel"))) (build-system r-build-system) @@ -7546,13 +7540,13 @@ biological sequences or sets of sequences.") (define-public r-rsamtools (package (name "r-rsamtools") - (version "1.32.0") + (version "1.32.3") (source (origin (method url-fetch) (uri (bioconductor-uri "Rsamtools" version)) (sha256 (base32 - "1s65y5wn4d0x8zsljg2kmhcl6r9884h95kr041j7hp49bmxg3an6")))) + "1hpjr22h33pf4fgv0sj83rqzv6l5l7s6fpmmqvchh45ikks1mnhq")))) (properties `((upstream-name . "Rsamtools"))) (build-system r-build-system) @@ -7590,13 +7584,13 @@ files.") (define-public r-delayedarray (package (name "r-delayedarray") - (version "0.6.1") + (version "0.6.5") (source (origin (method url-fetch) (uri (bioconductor-uri "DelayedArray" version)) (sha256 (base32 - "0sjwszxdi0vkj2i2di5i46gh9chc660yr3gs5nk9qnqp77713zds")))) + "10b03zrnvz5isfh4z55hasya2m71lrfx10l5lm2sdmqs0gwkanrd")))) (properties `((upstream-name . "DelayedArray"))) (build-system r-build-system) @@ -7685,13 +7679,13 @@ alignments.") (define-public r-rtracklayer (package (name "r-rtracklayer") - (version "1.40.3") + (version "1.40.6") (source (origin (method url-fetch) (uri (bioconductor-uri "rtracklayer" version)) (sha256 (base32 - "0kvsjdaypn1jnxbnsxpycildwdyxwnjkigfq8qm8mlyfc4ahdgy3")))) + "1wxxxlyps19dw3i0pw4mlm3kinnswsc35rgvlnbwvpnpjbca6w4l")))) (build-system r-build-system) (arguments `(#:phases @@ -7732,13 +7726,13 @@ as well as query and modify the browser state, such as the current viewport.") (define-public r-genomicfeatures (package (name "r-genomicfeatures") - (version "1.32.0") + (version "1.32.2") (source (origin (method url-fetch) (uri (bioconductor-uri "GenomicFeatures" version)) (sha256 (base32 - "1cqcl72q0k5wylw1brn4g4h7xzys1v06piry19cvp0gjcvm5sp7a")))) + "0kfyyg1ib8fkq2hxraal10z4bx3rg8figdskw4yhn1mbh6l42q5f")))) (properties `((upstream-name . "GenomicFeatures"))) (build-system r-build-system) @@ -7794,25 +7788,6 @@ extracting the desired features in a convenient format.") information about the latest version of the Gene Ontologies.") (license license:artistic2.0))) -(define-public r-graph - (package - (name "r-graph") - (version "1.58.0") - (source (origin - (method url-fetch) - (uri (bioconductor-uri "graph" version)) - (sha256 - (base32 - "1zx445lk36g1s6i5dbhhf00nzzazyklfjxxjfax6q8hnhvgm9759")))) - (build-system r-build-system) - (propagated-inputs - `(("r-biocgenerics" ,r-biocgenerics))) - (home-page "https://bioconductor.org/packages/graph") - (synopsis "Handle graph data structures in R") - (description - "This package implements some simple graph handling capabilities for R.") - (license license:artistic2.0))) - (define-public r-topgo (package (name "r-topgo") @@ -8544,7 +8519,7 @@ paired-end data.") `(("r-testthat" ,r-testthat) ;; During vignette building knitr checks that "pandoc-citeproc" ;; is in the PATH. - ("ghc-pandoc-citeproc" ,ghc-pandoc-citeproc-with-pandoc-1))) + ("ghc-pandoc-citeproc" ,ghc-pandoc-citeproc))) (propagated-inputs `(("r-biocgenerics" ,r-biocgenerics) ("r-biomart" ,r-biomart) @@ -9328,14 +9303,14 @@ unmodeled, or latent sources of noise.") (define-public r-seqminer (package (name "r-seqminer") - (version "6.0") + (version "6.1") (source (origin (method url-fetch) (uri (cran-uri "seqminer" version)) (sha256 (base32 - "057j1l6dip35l1aivilapl2zv9db677b3di2pb3sfgq2sxg0ps3l")))) + "15yhg4vfc7jg1jnqb3371j00pgbmbyc9l1xx63hq1l3p34lazq2l")))) (build-system r-build-system) (inputs `(("zlib" ,zlib))) @@ -9382,14 +9357,14 @@ trait.") (define-public r-maldiquant (package (name "r-maldiquant") - (version "1.17") + (version "1.18") (source (origin (method url-fetch) (uri (cran-uri "MALDIquant" version)) (sha256 (base32 - "047s6007ydc38x8wm027mlb4mngz15n0d4238fr8h43wyll5zy0z")))) + "18nl214xjsxkcpbg79jkmw0yznwm5szyh2qb84n7ip46mm779ha6")))) (properties `((upstream-name . "MALDIquant"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/MALDIquant") @@ -9626,14 +9601,14 @@ structure (pcaRes) to provide a common interface to the PCA results.") (define-public r-msnbase (package (name "r-msnbase") - (version "2.6.1") + (version "2.6.3") (source (origin (method url-fetch) (uri (bioconductor-uri "MSnbase" version)) (sha256 (base32 - "0zrpx9r93q5ca2zdak5rs2m9sjm0wjdra1xfj3d3sx6p5gzfyg6n")))) + "15jhqg02ypmznc0wxksw56yij02csy678vqy531fdv86fsmypwa0")))) (properties `((upstream-name . "MSnbase"))) (build-system r-build-system) (propagated-inputs @@ -9708,58 +9683,31 @@ and irregular enzymatic cleavages, mass measurement accuracy, etc.") (define-public r-seurat (package (name "r-seurat") - (version "2.3.2") + (version "2.3.4") (source (origin (method url-fetch) (uri (cran-uri "Seurat" version)) (sha256 (base32 - "1sjpy5rrpvlpm6hs7qy7qpglgbp7zrgfybcsalpmjb51rhxhgcg1")) - ;; Delete pre-built jar. - (snippet - '(begin (delete-file "inst/java/ModularityOptimizer.jar") - #t)))) + "0l8bv4i9nzz26mirnva10mq6pimibj24vk7vpvfypgn7xk4942hd")))) (properties `((upstream-name . "Seurat"))) (build-system r-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'build-jar - (lambda* (#:key inputs #:allow-other-keys) - (let ((classesdir "tmp-classes")) - (setenv "JAVA_HOME" (assoc-ref inputs "jdk")) - (mkdir classesdir) - (with-output-to-file "manifest" - (lambda _ - (display "Manifest-Version: 1.0 -Main-Class: ModularityOptimizer\n"))) - (and (zero? (apply system* `("javac" "-d" ,classesdir - ,@(find-files "java" "\\.java$")))) - (zero? (system* "jar" - "-cmf" "manifest" - "inst/java/ModularityOptimizer.jar" - "-C" classesdir "."))))))))) - (native-inputs - `(("jdk" ,icedtea "jdk"))) (propagated-inputs `(("r-ape" ,r-ape) - ("r-caret" ,r-caret) ("r-cluster" ,r-cluster) ("r-cowplot" ,r-cowplot) - ("r-diffusionmap" ,r-diffusionmap) ("r-dosnow" ,r-dosnow) ("r-dplyr" ,r-dplyr) ("r-dtw" ,r-dtw) ("r-fitdistrplus" ,r-fitdistrplus) - ("r-fnn" ,r-fnn) ("r-foreach" ,r-foreach) ("r-fpc" ,r-fpc) - ("r-gdata" ,r-gdata) ("r-ggplot2" ,r-ggplot2) ("r-ggridges" ,r-ggridges) ("r-gplots" ,r-gplots) ("r-hdf5r" ,r-hdf5r) ("r-hmisc" ,r-hmisc) + ("r-httr" ,r-httr) ("r-ica" ,r-ica) ("r-igraph" ,r-igraph) ("r-irlba" ,r-irlba) @@ -9772,7 +9720,6 @@ Main-Class: ModularityOptimizer\n"))) ("r-pbapply" ,r-pbapply) ("r-plotly" ,r-plotly) ("r-png" ,r-png) - ("r-ranger" ,r-ranger) ("r-rann" ,r-rann) ("r-rcolorbrewer" ,r-rcolorbrewer) ("r-rcpp" ,r-rcpp) @@ -9783,11 +9730,8 @@ Main-Class: ModularityOptimizer\n"))) ("r-rocr" ,r-rocr) ("r-rtsne" ,r-rtsne) ("r-sdmtools" ,r-sdmtools) - ("r-stringr" ,r-stringr) - ("r-tclust" ,r-tclust) ("r-tidyr" ,r-tidyr) - ("r-tsne" ,r-tsne) - ("r-vgam" ,r-vgam))) + ("r-tsne" ,r-tsne))) (home-page "http://www.satijalab.org/seurat") (synopsis "Seurat is an R toolkit for single cell genomics") (description @@ -9860,14 +9804,14 @@ distribution.") (define-public r-edaseq (package (name "r-edaseq") - (version "2.14.0") + (version "2.14.1") (source (origin (method url-fetch) (uri (bioconductor-uri "EDASeq" version)) (sha256 (base32 - "1832pb3jkim4vrqzb8lajwx9r482bhww5n9nz3s6crvyamlp2dj0")))) + "0970w9d5ddqw1qxqqafdidkxh6hmcv9j5djwgnpz3fgl05kmysg8")))) (properties `((upstream-name . "EDASeq"))) (build-system r-build-system) (propagated-inputs @@ -9987,14 +9931,14 @@ microarrays or GRanges for sequencing data.") (define-public r-keggrest (package (name "r-keggrest") - (version "1.20.0") + (version "1.20.1") (source (origin (method url-fetch) (uri (bioconductor-uri "KEGGREST" version)) (sha256 (base32 - "1349vidgl9m10l1rbrp3pkwwgi2xcbsw9h9z2xqbvg97lmqc4r8j")))) + "1ss0xd5570x570v01r6lp64rr1apjrzp0j62520pvm3g8knjhfvs")))) (properties `((upstream-name . "KEGGREST"))) (build-system r-build-system) (propagated-inputs @@ -10207,14 +10151,14 @@ the fact that each of these packages implements a select methods.") (define-public r-biovizbase (package (name "r-biovizbase") - (version "1.28.0") + (version "1.28.2") (source (origin (method url-fetch) (uri (bioconductor-uri "biovizBase" version)) (sha256 (base32 - "0lkiqdr3ics6hgv47lwkykcy761823bbkhffbn4ykyfzyqwl4p67")))) + "0wc45j3hfn01i44bkkxjj3n8b8xzbkkcdv35mrkzb1f9yprkf8gq")))) (properties `((upstream-name . "biovizBase"))) (build-system r-build-system) (propagated-inputs @@ -10231,6 +10175,7 @@ the fact that each of these packages implements a select methods.") ("r-hmisc" ,r-hmisc) ("r-iranges" ,r-iranges) ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-rlang" ,r-rlang) ("r-rsamtools" ,r-rsamtools) ("r-s4vectors" ,r-s4vectors) ("r-scales" ,r-scales) @@ -10248,14 +10193,14 @@ effort and encourages consistency.") (define-public r-ggbio (package (name "r-ggbio") - (version "1.28.0") + (version "1.28.5") (source (origin (method url-fetch) (uri (bioconductor-uri "ggbio" version)) (sha256 (base32 - "0wszh3w8yia5zw758h837i1q35k99sn444y2hahcxqbdmmlbf7in")))) + "19s2v40fycwf44fl3lm791y635xzw67b30sq2g0qq4a6phjik42d")))) (build-system r-build-system) (propagated-inputs `(("r-annotationdbi" ,r-annotationdbi) @@ -10278,6 +10223,7 @@ effort and encourages consistency.") ("r-iranges" ,r-iranges) ("r-organismdbi" ,r-organismdbi) ("r-reshape2" ,r-reshape2) + ("r-rlang" ,r-rlang) ("r-rsamtools" ,r-rsamtools) ("r-rtracklayer" ,r-rtracklayer) ("r-s4vectors" ,r-s4vectors) @@ -10732,14 +10678,14 @@ problems in genomics, brain imaging, astrophysics, and data mining.") (define-public r-hdf5array (package (name "r-hdf5array") - (version "1.8.0") + (version "1.8.1") (source (origin (method url-fetch) (uri (bioconductor-uri "HDF5Array" version)) (sha256 (base32 - "1l0276qxkhgdxsfck3jmi8jvnsr20g10gjki53g0mqa45wnhm3ck")))) + "1s44zgm9jg82bk4b8k3dh7xw7mxychlfm3grs8516mxnw91zpvy5")))) (properties `((upstream-name . "HDF5Array"))) (build-system r-build-system) (propagated-inputs @@ -10878,13 +10824,13 @@ libraries.") (define-public r-scater (package (name "r-scater") - (version "1.8.0") + (version "1.8.4") (source (origin (method url-fetch) (uri (bioconductor-uri "scater" version)) (sha256 (base32 - "0bhpikgz3b9f510dawsay4zry9rlp8vjx5n6zvwbcpwrd94p3903")))) + "173lfpas2fqsp4xxsw01wkxd4496c5p8himw9b4r9z4npxkfyv16")))) (build-system r-build-system) (propagated-inputs `(("r-beachmat" ,r-beachmat) @@ -10922,14 +10868,14 @@ quality control.") (define-public r-scran (package (name "r-scran") - (version "1.8.2") + (version "1.8.4") (source (origin (method url-fetch) (uri (bioconductor-uri "scran" version)) (sha256 (base32 - "0nbn5x75gf9d0p18w7vpkbv30cpdqvp5bz8xvila0h7jla7xdyih")))) + "17vq9vb9ak7n4mcqpwnm9x3z91vmr7xnsgj8f45b8dbj7m0v126j")))) (build-system r-build-system) (propagated-inputs `(("r-beachmat" ,r-beachmat) @@ -12885,8 +12831,8 @@ once. This package provides tools to perform Drop-seq analyses.") ("r-rtracklayer" ,r-rtracklayer) ("r-rjson" ,r-rjson) ("salmon" ,salmon) - ("ghc-pandoc" ,ghc-pandoc-1) - ("ghc-pandoc-citeproc" ,ghc-pandoc-citeproc-with-pandoc-1) + ("ghc-pandoc" ,ghc-pandoc) + ("ghc-pandoc-citeproc" ,ghc-pandoc-citeproc) ("python-wrapper" ,python-wrapper) ("python-pyyaml" ,python-pyyaml))) (home-page "http://bioinformatics.mdc-berlin.de/pigx/") @@ -12947,8 +12893,8 @@ expression report comparing samples in an easily configurable manner.") ("macs" ,macs) ("multiqc" ,multiqc) ("perl" ,perl) - ("ghc-pandoc" ,ghc-pandoc-1) - ("ghc-pandoc-citeproc" ,ghc-pandoc-citeproc-with-pandoc-1) + ("ghc-pandoc" ,ghc-pandoc) + ("ghc-pandoc-citeproc" ,ghc-pandoc-citeproc) ("fastqc" ,fastqc) ("bowtie" ,bowtie) ("idr" ,idr) @@ -13009,8 +12955,8 @@ in an easily configurable manner.") ("r-bookdown" ,r-bookdown) ("r-ggplot2" ,r-ggplot2) ("r-ggbio" ,r-ggbio) - ("ghc-pandoc" ,ghc-pandoc-1) - ("ghc-pandoc-citeproc" ,ghc-pandoc-citeproc-with-pandoc-1) + ("ghc-pandoc" ,ghc-pandoc) + ("ghc-pandoc-citeproc" ,ghc-pandoc-citeproc) ("python-wrapper" ,python-wrapper) ("python-pyyaml" ,python-pyyaml) ("snakemake" ,snakemake-4) @@ -13060,8 +13006,8 @@ methylation and segmentation.") ("python-magic" ,python-magic) ("python-numpy" ,python-numpy) ("python-loompy" ,python-loompy) - ("ghc-pandoc" ,ghc-pandoc-1) - ("ghc-pandoc-citeproc" ,ghc-pandoc-citeproc-with-pandoc-1) + ("ghc-pandoc" ,ghc-pandoc) + ("ghc-pandoc-citeproc" ,ghc-pandoc-citeproc) ("samtools" ,samtools) ("snakemake" ,snakemake-4) ("star" ,star) |