diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 18 |
1 files changed, 9 insertions, 9 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f956aef5af..d3d9344322 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -6367,7 +6367,7 @@ track. The database is exposed as a @code{TxDb} object.") (propagated-inputs `(("r-rcurl" ,r-rcurl) ("r-xml" ,r-xml))) - (home-page "http://cran.r-project.org/web/packages/SPARQL") + (home-page "https://cran.r-project.org/web/packages/SPARQL") (synopsis "SPARQL client for R") (description "This package provides an interface to use SPARQL to pose SELECT or UPDATE queries to an end-point.") @@ -6378,7 +6378,7 @@ SELECT or UPDATE queries to an end-point.") (define-public vsearch (package (name "vsearch") - (version "2.6.0") + (version "2.6.2") (source (origin (method url-fetch) @@ -6388,7 +6388,7 @@ SELECT or UPDATE queries to an end-point.") (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "0rplgpvsdkxw0k371ckxrp6i77jn93ckhslaazwbyd85m83nkynr")) + "02khrgh8hm11cgww2f9mqc6886zqli9ss4pd4kfpqzd0d31vbzv5")) (patches (search-patches "vsearch-unbundle-cityhash.patch")) (snippet '(begin @@ -6601,7 +6601,7 @@ BLAST, KEGG, GenBank, MEDLINE and GO.") (propagated-inputs `(("r-ggplot2" ,r-ggplot2) ("r-gridextra" ,r-gridextra))) - (home-page "http://cran.r-project.org/web/packages/ACSNMineR") + (home-page "https://cran.r-project.org/web/packages/ACSNMineR") (synopsis "Gene enrichment analysis") (description "This package provides tools to compute and represent gene set enrichment @@ -8332,14 +8332,14 @@ library implementing most of the pipeline's features.") (define-public r-mutationalpatterns (package (name "r-mutationalpatterns") - (version "1.4.1") + (version "1.4.2") (source (origin (method url-fetch) (uri (bioconductor-uri "MutationalPatterns" version)) (sha256 (base32 - "1qhxlfl85ifr30wrsidcn3kca3vs8fd8cmwd82gvgx9ppww8vs06")))) + "08ay9h5cqsi8ypb6r0g4rfa5l1g06jgfzl64wmhgz134yqbl7vfv")))) (build-system r-build-system) (propagated-inputs `(("r-biocgenerics" ,r-biocgenerics) @@ -8497,7 +8497,7 @@ factors bound at the specific regions.") ("r-rtracklayer" ,r-rtracklayer) ("r-s4vectors" ,r-s4vectors) ("r-seqinr" ,r-seqinr))) - (home-page "http://cran.r-project.org/web/packages/gkmSVM") + (home-page "https://cran.r-project.org/web/packages/gkmSVM") (synopsis "Gapped-kmer support vector machine") (description "This R package provides tools for training gapped-kmer SVM classifiers @@ -9090,7 +9090,7 @@ trait.") "047s6007ydc38x8wm027mlb4mngz15n0d4238fr8h43wyll5zy0z")))) (properties `((upstream-name . "MALDIquant"))) (build-system r-build-system) - (home-page "http://cran.r-project.org/web/packages/MALDIquant") + (home-page "https://cran.r-project.org/web/packages/MALDIquant") (synopsis "Quantitative analysis of mass spectrometry data") (description "This package provides a complete analysis pipeline for matrix-assisted @@ -9997,7 +9997,7 @@ interval to data view, mismatch pileup, and several splicing summaries.") (propagated-inputs `(("r-plyr" ,r-plyr) ("r-rcurl" ,r-rcurl))) - (home-page "http://cran.r-project.org/web/packages/gProfileR/") + (home-page "https://cran.r-project.org/web/packages/gProfileR/") (synopsis "Interface to the g:Profiler toolkit") (description "This package provides tools for functional enrichment analysis, |