diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r-- | gnu/packages/bioinformatics.scm | 20 |
1 files changed, 6 insertions, 14 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index d72fde00b4..bfac90ecf7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3260,9 +3260,7 @@ comment or quality sections.") (lambda* (#:key inputs #:allow-other-keys) ;; Ensure that Eigen headers can be found (setenv "CPLUS_INCLUDE_PATH" - (string-append (getenv "CPLUS_INCLUDE_PATH") - ":" - (assoc-ref inputs "eigen") + (string-append (assoc-ref inputs "eigen") "/include/eigen3")) #t)) (add-before 'build 'bin-mkdir @@ -11697,9 +11695,7 @@ bytes of memory space, where n is the length of the string.") ;; Ensure that Eigen headers can be found (setenv "CPLUS_INCLUDE_PATH" - (string-append (getenv "CPLUS_INCLUDE_PATH") - ":" - (assoc-ref inputs "eigen") + (string-append (assoc-ref inputs "eigen") "/include/eigen3")) #t))))) (inputs @@ -11878,14 +11874,11 @@ The following file formats are supported: (("lib/libdivsufsort.a") "/lib/libdivsufsort.so")) ;; Ensure that all headers can be found - (setenv "CPLUS_INCLUDE_PATH" - (string-append (getenv "CPLUS_INCLUDE_PATH") + (setenv "CPATH" + (string-append (getenv "CPATH") ":" (assoc-ref inputs "eigen") "/include/eigen3")) - (setenv "CPATH" - (string-append (assoc-ref inputs "eigen") - "/include/eigen3")) #t)) ;; CMAKE_INSTALL_PREFIX does not exist when the tests are ;; run. It only exists after the install phase. @@ -13954,13 +13947,11 @@ datasets.") ("ghc-intervalmap" ,ghc-intervalmap) ("ghc-missingh" ,ghc-missingh) ("ghc-optparse-applicative" ,ghc-optparse-applicative) - ("ghc-parsec" ,ghc-parsec) ("ghc-regex" ,ghc-regex) ("ghc-safe" ,ghc-safe) ("ghc-safeio" ,ghc-safeio) ("ghc-strict" ,ghc-strict) ("ghc-tar" ,ghc-tar) - ("ghc-text" ,ghc-text) ("ghc-unliftio" ,ghc-unliftio) ("ghc-unliftio-core" ,ghc-unliftio-core) ("ghc-vector" ,ghc-vector) @@ -14081,7 +14072,8 @@ choosing which reads pass the filter.") (lambda* (#:key inputs #:allow-other-keys) (setenv "CPATH" (string-append (assoc-ref inputs "eigen") - "/include/eigen3")) + "/include/eigen3:" + (or (getenv "CPATH") ""))) #t)) (delete 'configure) (replace 'install |