diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 33 |
1 files changed, 31 insertions, 2 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 313ffa11ae..bfac90ecf7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -12524,7 +12524,7 @@ once. This package provides tools to perform Drop-seq analyses.") (define-public pigx-rnaseq (package (name "pigx-rnaseq") - (version "0.0.8") + (version "0.0.10") (source (origin (method url-fetch) (uri (string-append "https://github.com/BIMSBbioinfo/pigx_rnaseq/" @@ -12532,7 +12532,7 @@ once. This package provides tools to perform Drop-seq analyses.") "/pigx_rnaseq-" version ".tar.gz")) (sha256 (base32 - "19nhflzs6k5c7yhi7gkwggq237cjdd1s4b4qkj5x5fkwg0rhn33i")))) + "0z3hr120wk2vrlmlpz1vp3n9wy3rq4y2mnzh2vf08qgqn2xfdwcw")))) (build-system gnu-build-system) (arguments `(#:parallel-tests? #f ; not supported @@ -14746,6 +14746,35 @@ vast-tools, an RNA-Seq pipeline for alternative splicing analysis. The plots are generated using @code{ggplot2}.") (license license:expat))) +(define-public python-ont-fast5-api + (package + (name "python-ont-fast5-api") + (version "1.4.4") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/nanoporetech/ont_fast5_api.git") + (commit (string-append "release_" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "03cbq4zbbwhll8ml2m9k8sa31mirsvcbjkrq1yna0kkzz9fad5fm")))) + (build-system python-build-system) + (propagated-inputs + `(("python-numpy" ,python-numpy) + ("python-six" ,python-six) + ("python-h5py" ,python-h5py) + ("python-progressbar33" ,python-progressbar33))) + (home-page "https://github.com/nanoporetech/ont_fast5_api") + (synopsis "Interface to HDF5 files of the Oxford Nanopore fast5 file format") + (description + "This package provides a concrete implementation of the fast5 file schema +using the generic @code{h5py} library, plain-named methods to interact with +and reflect the fast5 file schema, and tools to convert between +@code{multi_read} and @code{single_read} formats.") + (license license:mpl2.0))) + (define-public tbsp (let ((commit "ec8fff4410cfb13a677dbbb95cbbc60217e64907") (revision "1")) |