diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 56 |
1 files changed, 28 insertions, 28 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 96ea07bdc4..1cf1de1ae5 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -6292,14 +6292,14 @@ information as possible.") (define-public r-vegan (package (name "r-vegan") - (version "2.5-2") + (version "2.5-3") (source (origin (method url-fetch) (uri (cran-uri "vegan" version)) (sha256 (base32 - "13pyqvlpz64qibi8k5d109v7q09j06mbv6ndix3n4cn21mjx391c")))) + "023xznh0iy0496icpchadmp7a3rk3nj9s48fvwlvp3dssw58yp3c")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) @@ -7309,13 +7309,13 @@ utilities for sequence data management under the ACNUC system.") (define-public r-iranges (package (name "r-iranges") - (version "2.14.11") + (version "2.14.12") (source (origin (method url-fetch) (uri (bioconductor-uri "IRanges" version)) (sha256 (base32 - "0wz63hysspyjihqadg91dbvllc5a61zzjrsz0b9498lihqc6m1la")))) + "1ar8sqqgjdy00dbgrxnacqy6gwir5xax76yf0vjxi2vj2skqb0kn")))) (properties `((upstream-name . "IRanges"))) (build-system r-build-system) @@ -7338,7 +7338,7 @@ possible.") (define-public r-genomeinfodbdata (package (name "r-genomeinfodbdata") - (version "0.99.1") + (version "1.1.0") (source (origin (method url-fetch) ;; We cannot use bioconductor-uri here because this tarball is @@ -7348,7 +7348,7 @@ possible.") version ".tar.gz")) (sha256 (base32 - "0hipipvyvrh75n68hsjg35sxbcfzrghzxv547vnkk2f8ya99g01r")))) + "0k1hsjx6n2i1sf14hyrgdhxqxm5mxk0bgnivhiax944whcicmzbf")))) (properties `((upstream-name . "GenomeInfoDbData"))) (build-system r-build-system) @@ -7389,13 +7389,13 @@ names in their natural, rather than lexicographic, order.") (define-public r-edger (package (name "r-edger") - (version "3.22.3") + (version "3.22.5") (source (origin (method url-fetch) (uri (bioconductor-uri "edgeR" version)) (sha256 (base32 - "0w3jv29n0kkaiig8dbbdqy2dkng8xfaihch82mj9ci5hphrx3nng")))) + "0pkcdkh8mwdaca6xa8a7vwdfh46r03rkxwkrf17pwwd4557j7lj7")))) (properties `((upstream-name . "edgeR"))) (build-system r-build-system) (propagated-inputs @@ -7455,13 +7455,13 @@ coding changes and predict coding outcomes.") (define-public r-limma (package (name "r-limma") - (version "3.36.3") + (version "3.36.5") (source (origin (method url-fetch) (uri (bioconductor-uri "limma" version)) (sha256 (base32 - "0iiifszr6hcqih6kszdsbkx3gacfg3d7v8hdx0lbjqnjqgqz7pwk")))) + "0d13w95si7l6fqfsdf6k50v4l573hhfva6mvd94v26iba24p2f6x")))) (build-system r-build-system) (home-page "http://bioinf.wehi.edu.au/limma") (synopsis "Package for linear models for microarray and RNA-seq data") @@ -7510,13 +7510,13 @@ different technologies, including microarrays, RNA-seq, and quantitative PCR.") (define-public r-genomicranges (package (name "r-genomicranges") - (version "1.32.6") + (version "1.32.7") (source (origin (method url-fetch) (uri (bioconductor-uri "GenomicRanges" version)) (sha256 (base32 - "0p58yk2i5gqvjlkx548mnrr49wvs0xfcl06l9rqj2hi6hkkbvnp3")))) + "1lh54asabrmk982636avpp1kcfzakwxi31cbj3jc8mkhar1mkyrx")))) (properties `((upstream-name . "GenomicRanges"))) (build-system r-build-system) @@ -7716,13 +7716,13 @@ files.") (define-public r-delayedarray (package (name "r-delayedarray") - (version "0.6.5") + (version "0.6.6") (source (origin (method url-fetch) (uri (bioconductor-uri "DelayedArray" version)) (sha256 (base32 - "10b03zrnvz5isfh4z55hasya2m71lrfx10l5lm2sdmqs0gwkanrd")))) + "0rkp0mfsq3wfnib389dh3i44ab0wiz8skkjcv4596dwgq50jqpf2")))) (properties `((upstream-name . "DelayedArray"))) (build-system r-build-system) @@ -7858,13 +7858,13 @@ as well as query and modify the browser state, such as the current viewport.") (define-public r-genomicfeatures (package (name "r-genomicfeatures") - (version "1.32.2") + (version "1.32.3") (source (origin (method url-fetch) (uri (bioconductor-uri "GenomicFeatures" version)) (sha256 (base32 - "0kfyyg1ib8fkq2hxraal10z4bx3rg8figdskw4yhn1mbh6l42q5f")))) + "06prj5iih3ywsgq00lgfl29p3f8j23a0kqqhzhqcgjrrwsp94588")))) (properties `((upstream-name . "GenomicFeatures"))) (build-system r-build-system) @@ -7899,7 +7899,7 @@ extracting the desired features in a convenient format.") (define-public r-go-db (package (name "r-go-db") - (version "3.5.0") + (version "3.6.0") (source (origin (method url-fetch) (uri (string-append "https://www.bioconductor.org/packages/" @@ -7907,7 +7907,7 @@ extracting the desired features in a convenient format.") version ".tar.gz")) (sha256 (base32 - "02d1mn1al3q7qvhx1ylrr3ar4w4iw0qyi5d89v2336rzwk9maq35")))) + "0fi2qywr9apg5lwfqfq9qq6bgrnv4rdhxx25656qn4bsy62i838j")))) (properties `((upstream-name . "GO.db"))) (build-system r-build-system) @@ -8777,14 +8777,14 @@ in SNV base substitution data.") (define-public r-wgcna (package (name "r-wgcna") - (version "1.63") + (version "1.66") (source (origin (method url-fetch) (uri (cran-uri "WGCNA" version)) (sha256 (base32 - "1225dqm68bynkmklnsxdqdd3zqrpzbvqwyly8ibxmk75z33xz309")))) + "0rhnyhzfn93yp24jz9v6dzrmyizwzdw070a7idm0k33w1cm8sjqv")))) (properties `((upstream-name . "WGCNA"))) (build-system r-build-system) (propagated-inputs @@ -9359,13 +9359,13 @@ number detection tools.") (define-public r-methylkit (package (name "r-methylkit") - (version "1.6.1") + (version "1.6.3") (source (origin (method url-fetch) (uri (bioconductor-uri "methylKit" version)) (sha256 (base32 - "1hr2czi5ybdf7hdmqsv39d17f3mvmw94wa38bc14zzm9mgy9gfy7")))) + "1nla74d2sjs51yyvvxf038a03mhw9appvjzj60vr2vd3p5lhqn9k")))) (properties `((upstream-name . "methylKit"))) (build-system r-build-system) (propagated-inputs @@ -9733,14 +9733,14 @@ structure (pcaRes) to provide a common interface to the PCA results.") (define-public r-msnbase (package (name "r-msnbase") - (version "2.6.3") + (version "2.6.4") (source (origin (method url-fetch) (uri (bioconductor-uri "MSnbase" version)) (sha256 (base32 - "15jhqg02ypmznc0wxksw56yij02csy678vqy531fdv86fsmypwa0")))) + "1civd8b1rd5n6ys52dazw5m1yy2wq7049dbbyhzv7pjpa1m2x1rm")))) (properties `((upstream-name . "MSnbase"))) (build-system r-build-system) (propagated-inputs @@ -10063,14 +10063,14 @@ microarrays or GRanges for sequencing data.") (define-public r-keggrest (package (name "r-keggrest") - (version "1.20.1") + (version "1.20.2") (source (origin (method url-fetch) (uri (bioconductor-uri "KEGGREST" version)) (sha256 (base32 - "1ss0xd5570x570v01r6lp64rr1apjrzp0j62520pvm3g8knjhfvs")))) + "0whmmbkq8bmc3ll20l4cv6hhxjgzbkrs97japljzg07ncn1fffsa")))) (properties `((upstream-name . "KEGGREST"))) (build-system r-build-system) (propagated-inputs @@ -10378,14 +10378,14 @@ interval to data view, mismatch pileup, and several splicing summaries.") (define-public r-gprofiler (package (name "r-gprofiler") - (version "0.6.6") + (version "0.6.7") (source (origin (method url-fetch) (uri (cran-uri "gProfileR" version)) (sha256 (base32 - "1n6cj12j102b4x9vhyl4dljp1i0r43p23cnhqbx4als2xfxdlqgi")))) + "12nwidbnqmnfy5dnqga26byslvdnkrpz2fi19qfcby6xx0wbndk7")))) (properties `((upstream-name . "gProfileR"))) (build-system r-build-system) (propagated-inputs |