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Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6a3376d395..2ad77acd04 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1600,6 +1600,37 @@ the phenotype as it models the data.") generated using the PacBio Iso-Seq protocol.") (license license:bsd-3)))) +(define-public prodigal + (package + (name "prodigal") + (version "2.6.2") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/hyattpd/Prodigal/archive/v" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0m8sb0fg6lmxrlpzna0am6svbnlmd3dckrhgzxxgb3gxr5fyj284")))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f ;no check target + #:make-flags (list (string-append "INSTALLDIR=" + (assoc-ref %outputs "out") + "/bin")) + #:phases + (modify-phases %standard-phases + (delete 'configure)))) + (home-page "http://prodigal.ornl.gov") + (synopsis "Protein-coding gene prediction for Archaea and Bacteria") + (description + "Prodigal runs smoothly on finished genomes, draft genomes, and +metagenomes, providing gene predictions in GFF3, Genbank, or Sequin table +format. It runs quickly, in an unsupervised fashion, handles gaps, handles +partial genes, and identifies translation initiation sites.") + (license license:gpl3+))) + (define-public rsem (package (name "rsem") |