diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6fc2bee469..8bc5b868ec 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1107,6 +1107,34 @@ variant calling (in conjunction with bcftools), and a simple alignment viewer.") (license license:expat))) +(define-public samtools-0.1 + ;; This is the most recent version of the 0.1 line of samtools. The input + ;; and output formats differ greatly from that used and produced by samtools + ;; 1.x and is still used in many bioinformatics pipelines. + (package (inherit samtools) + (version "0.1.19") + (source + (origin + (method url-fetch) + (uri + (string-append "mirror://sourceforge/samtools/" + version "/samtools-" version ".tar.bz2")) + (sha256 + (base32 "1m33xsfwz0s8qi45lylagfllqg7fphf4dr0780rsvw75av9wk06h")))) + (arguments + (substitute-keyword-arguments (package-arguments samtools) + ((#:tests? tests) #f) ;no "check" target + ((#:phases phases) + `(modify-phases ,phases + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let ((bin (string-append + (assoc-ref outputs "out") "/bin"))) + (mkdir-p bin) + (copy-file "samtools" + (string-append bin "/samtools"))))) + (delete 'patch-tests))))))) + (define-public ngs-sdk (package (name "ngs-sdk") |