diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 35 |
1 files changed, 35 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index fc0ce4a166..744f8c2a4a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -285,6 +285,41 @@ and more accurate. BWA-MEM also has better performance than BWA-backtrack for 70-100bp Illumina reads.") (license license:gpl3+))) +(define-public python2-bx-python + (package + (name "python2-bx-python") + (version "0.7.2") + (source (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/b/bx-python/bx-python-" + version ".tar.gz")) + (sha256 + (base32 + "0ld49idhc5zjdvbhvjq1a2qmpjj7h5v58rqr25dzmfq7g34b50xh")) + (modules '((guix build utils))) + (snippet + '(substitute* "setup.py" + ;; remove dependency on outdated "distribute" module + (("^from distribute_setup import use_setuptools") "") + (("^use_setuptools\\(\\)") ""))))) + (build-system python-build-system) + (arguments + `(#:tests? #f ;tests fail because test data are not included + #:python ,python-2)) + (inputs + `(("python-numpy" ,python2-numpy) + ("zlib" ,zlib))) + (native-inputs + `(("python-nose" ,python2-nose) + ("python-setuptools" ,python2-setuptools))) + (home-page "http://bitbucket.org/james_taylor/bx-python/") + (synopsis "Tools for manipulating biological data") + (description + "bx-python provides tools for manipulating biological data, particularly +multiple sequence alignments.") + (license license:expat))) + (define-public clipper (package (name "clipper") |