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Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 38 |
1 files changed, 38 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 3215a155f1..528b603476 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -15435,3 +15435,41 @@ files are loaded into a SQLite database, allowing much more complex manipulation of hierarchical features (e.g., genes, transcripts, and exons) than is possible with plain-text methods alone.") (license license:expat)))) + +(define-public libsbml + (package + (name "libsbml") + (version "5.18.0") + (source (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/sbml/libsbml/" + version "/stable/libSBML-" + version "-core-src.tar.gz")) + (sha256 + (base32 + "0slkagrk3nfi2qsksv6b1brj6zhx4bj4bkib2sdycvrcd10ql2lh")))) + (build-system cmake-build-system) + (arguments + `(#:test-target "test" + #:configure-flags + (list "-DWITH_CHECK=ON" + (string-append "-DLIBXML_LIBRARY=" + (assoc-ref %build-inputs "libxml2") + "/lib/libxml2.so") + (string-append "-DLIBXML_INCLUDE_DIR=" + (assoc-ref %build-inputs "libxml2") + "/include/libxml2")))) + (propagated-inputs + `(("libxml2" ,libxml2))) + (native-inputs + `(("check" ,check) + ("swig" ,swig))) + (home-page "http://sbml.org/Software/libSBML") + (synopsis "Process SBML files and data streams") + (description "LibSBML is a library to help you read, write, manipulate, +translate, and validate SBML files and data streams. The @dfn{Systems Biology +Markup Language} (SBML) is an interchange format for computer models of +biological processes. SBML is useful for models of metabolism, cell +signaling, and more. It continues to be evolved and expanded by an +international community.") + (license license:lgpl2.1+))) |