diff options
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 896d451bac..beb46c9ded 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6650,3 +6650,31 @@ algorithm which is more efficient for larger data sets.") "This is a package for biclustering analysis and exploration of results.") (license license:gpl2))) + +(define-public r-bifet + (package + (name "r-bifet") + (version "1.6.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "BiFET" version)) + (sha256 + (base32 + "0ck1d6hxd4f40hfz8p2z5xmjbz79yhrf6fisjka2xzk5v9fm4p4k")))) + (properties `((upstream-name . "BiFET"))) + (build-system r-build-system) + (propagated-inputs + `(("r-genomicranges" ,r-genomicranges) + ("r-poibin" ,r-poibin))) + (home-page "https://bioconductor.org/packages/BiFET") + (synopsis "Bias-free footprint enrichment test") + (description + "BiFET identifies @dfn{transcription factors} (TFs) whose footprints are +over-represented in target regions compared to background regions after +correcting for the bias arising from the imbalance in read counts and GC +contents between the target and background regions. For a given TF k, BiFET +tests the null hypothesis that the target regions have the same probability of +having footprints for the TF k as the background regions while correcting for +the read count and GC content bias.") + (license license:gpl3))) |