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Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 35 |
1 files changed, 35 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 9540de3b72..d74d1cf706 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2583,6 +2583,41 @@ and regression inferences from RNA-sequencing data.") gene and isoform level using RNA-seq data") (license license:artistic2.0))) +(define-public r-karyoploter + (package + (name "r-karyoploter") + (version "1.12.4") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "karyoploteR" version)) + (sha256 + (base32 + "03jmfgmw35hrgn3pc5lq6pblzhfx9fp4l6dx50rp303lr7kjxp9v")))) + (build-system r-build-system) + (propagated-inputs + `(("r-regioner" ,r-regioner) + ("r-genomicranges" ,r-genomicranges) + ("r-iranges" ,r-iranges) + ("r-rsamtools" ,r-rsamtools) + ("r-memoise" ,r-memoise) + ("r-rtracklayer" ,r-rtracklayer) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-s4vectors" ,r-s4vectors) + ("r-biovizbase" ,r-biovizbase) + ("r-digest" ,r-digest) + ("r-bezier" ,r-bezier) + ("r-bamsignals" ,r-bamsignals) + ("r-annotationdbi" ,r-annotationdbi) + ("r-variantannotation" ,r-variantannotation))) + (home-page "https://bioconductor.org/packages/karyoploteR/") + (synopsis "Plot customizable linear genomes displaying arbitrary data") + (description "This package creates karyotype plots of arbitrary genomes and +offers a complete set of functions to plot arbitrary data on them. It mimicks +many R base graphics functions coupling them with a coordinate change function +automatically mapping the chromosome and data coordinates into the plot +coordinates.") + (license license:artistic2.0))) + (define-public r-lpsymphony (package (name "r-lpsymphony") |