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Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index b09d1957d8..02688ce473 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4064,3 +4064,35 @@ data for high-throughput, untargeted analyte profiling.") "Wrench is a package for normalization sparse genomic count data, like that arising from 16s metagenomic surveys.") (license license:artistic2.0))) + +(define-public r-wiggleplotr + (package + (name "r-wiggleplotr") + (version "1.6.1") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "wiggleplotr" version)) + (sha256 + (base32 + "12fhbskkjwv4d9bdy3gab8n9pcf7qpwiwgx0248as445vfw8dil3")))) + (build-system r-build-system) + (propagated-inputs + `(("r-assertthat" ,r-assertthat) + ("r-cowplot" ,r-cowplot) + ("r-dplyr" ,r-dplyr) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicranges" ,r-genomicranges) + ("r-ggplot2" ,r-ggplot2) + ("r-iranges" ,r-iranges) + ("r-purrr" ,r-purrr) + ("r-rtracklayer" ,r-rtracklayer) + ("r-s4vectors" ,r-s4vectors))) + (home-page "https://bioconductor.org/packages/wiggleplotr/") + (synopsis "Make read coverage plots from BigWig files") + (description + "This package provides tools to visualize read coverage from sequencing +experiments together with genomic annotations (genes, transcripts, peaks). +Introns of long transcripts can be rescaled to a fixed length for better +visualization of exonic read coverage.") + (license license:asl2.0))) |