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-rw-r--r--gnu/packages/bioconductor.scm32
1 files changed, 28 insertions, 4 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a1f7b2d2a8..29dac5b0f1 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2915,14 +2915,14 @@ to multiple hypothesis correction.")
(define-public r-dose
(package
(name "r-dose")
- (version "3.10.1")
+ (version "3.10.2")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "DOSE" version))
(sha256
(base32
- "0ab7mgj42fg6608qkciyqivr1n8s8r5ibvp0z3jfclrnyx6cl0w1"))))
+ "06jm1mnfd92s84f21562vsmj6jfkravfqf4lcxx2lk7s4ll66znj"))))
(properties `((upstream-name . "DOSE")))
(build-system r-build-system)
(propagated-inputs
@@ -3406,14 +3406,14 @@ type and symbol colors.")
(define-public r-genomicscores
(package
(name "r-genomicscores")
- (version "1.8.0")
+ (version "1.8.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "GenomicScores" version))
(sha256
(base32
- "17bd61icfycc61b5dij1968h026w7vfd9miwdcbppak1j6s08idq"))))
+ "0xgv5h6hwr4p2p05z8vzhivy97gfirm4rj1ihb5c8fhgc5vp85dy"))))
(properties `((upstream-name . "GenomicScores")))
(build-system r-build-system)
(propagated-inputs
@@ -4745,3 +4745,27 @@ enhancers. The annotatr package provides an easy way to summarize and
visualize the intersection of genomic sites/regions with genomic
annotations.")
(license license:gpl3)))
+
+(define-public r-rsubread
+ (package
+ (name "r-rsubread")
+ (version "1.34.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "Rsubread" version))
+ (sha256
+ (base32
+ "1230p8nsakifmpsqfiaj8rpm7npa8ab903mfjmayfa71n6yzvcbs"))))
+ (properties `((upstream-name . "Rsubread")))
+ (build-system r-build-system)
+ (inputs `(("zlib" ,zlib)))
+ (home-page "https://bioconductor.org/packages/Rsubread/")
+ (synopsis "Subread sequence alignment and counting for R")
+ (description
+ "This package provides tools for alignment, quantification and analysis
+of second and third generation sequencing data. It includes functionality for
+read mapping, read counting, SNP calling, structural variant detection and
+gene fusion discovery. It can be applied to all major sequencing techologies
+and to both short and long sequence reads.")
+ (license license:gpl3)))