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Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 9057158cde..ae9d7070c3 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1199,3 +1199,32 @@ sequencing data.") algorithm to segment DNA copy number data and identify genomic regions with abnormal copy number.") (license license:gpl2+))) + +;; This is a CRAN package, but it uncharacteristically depends on a +;; Bioconductor package. +(define-public r-htscluster + (package + (name "r-htscluster") + (version "2.0.8") + (source + (origin + (method url-fetch) + (uri (cran-uri "HTSCluster" version)) + (sha256 + (base32 + "0wnbfh6hdx8692jilgmv8sys1zm6fqc6mim7vvjhyqlmpm8gm0kg")))) + (properties `((upstream-name . "HTSCluster"))) + (build-system r-build-system) + (propagated-inputs + `(("r-capushe" ,r-capushe) + ("r-edger" ,r-edger) + ("r-plotrix" ,r-plotrix))) + (home-page "https://cran.r-project.org/web/packages/HTSCluster") + (synopsis "Clustering high-throughput transcriptome sequencing (HTS) data") + (description + "This package provides a Poisson mixture model is implemented to cluster +genes from high-throughput transcriptome sequencing (RNA-seq) data. Parameter +estimation is performed using either the EM or CEM algorithm, and the slope +heuristics are used for model selection (i.e., to choose the number of +clusters).") + (license license:gpl3+))) |