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Diffstat (limited to 'doc/guix.texi')
| -rw-r--r-- | doc/guix.texi | 20 |
1 files changed, 19 insertions, 1 deletions
diff --git a/doc/guix.texi b/doc/guix.texi index a3d751a296..2a97516084 100644 --- a/doc/guix.texi +++ b/doc/guix.texi @@ -4279,11 +4279,12 @@ guix import cpan Acme::Boolean @item cran @cindex CRAN +@cindex Bioconductor Import meta-data from @uref{http://cran.r-project.org/, CRAN}, the central repository for the @uref{http://r-project.org, GNU@tie{}R statistical and graphical environment}. -Information is extracted from the package's DESCRIPTION file. +Information is extracted from the package's @code{DESCRIPTION} file. The command command below imports meta-data for the @code{Cairo} R package: @@ -4292,6 +4293,21 @@ R package: guix import cran Cairo @end example +When @code{--archive=bioconductor} is added, meta-data is imported from +@uref{http://www.bioconductor.org/, Bioconductor}, a repository of R +packages for for the analysis and comprehension of high-throughput +genomic data in bioinformatics. + +Information is extracted from a package's @code{DESCRIPTION} file +published on the web interface of the Bioconductor SVN repository. + +The command command below imports meta-data for the @code{GenomicRanges} +R package: + +@example +guix import cran --archive=bioconductor GenomicRanges +@end example + @item nix Import meta-data from a local copy of the source of the @uref{http://nixos.org/nixpkgs/, Nixpkgs distribution}@footnote{This @@ -4490,6 +4506,8 @@ the updater for GNOME packages; the updater for @uref{http://elpa.gnu.org/, ELPA} packages; @item cran the updater for @uref{http://cran.r-project.org/, CRAN} packages; +@item bioconductor +the updater for @uref{http://www.bioconductor.org/, Bioconductor} R packages; @item pypi the updater for @uref{https://pypi.python.org, PyPI} packages. @end table |