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-rw-r--r--gnu/packages/bioinformatics.scm2
1 files changed, 2 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 57e2f00a99..b2a4ab2f8f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3211,6 +3211,8 @@ VCF.")
(sxml xpath))
#:phases
(modify-phases %standard-phases
+ ;; FIXME: this phase fails with "duplicate entry: htsjdk/samtools/AbstractBAMFileIndex$1.class"
+ (delete 'generate-jar-indices)
(add-after 'unpack 'remove-useless-build.xml
(lambda _ (delete-file "build.xml") #t))
;; This is necessary to ensure that htsjdk is found when using