diff options
| -rw-r--r-- | gnu/packages/web.scm | 32 |
1 files changed, 11 insertions, 21 deletions
diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm index 33c1e88a5d..c17bcc8f47 100644 --- a/gnu/packages/web.scm +++ b/gnu/packages/web.scm @@ -283,7 +283,7 @@ parse JSON formatted strings back into the C representation of JSON objects.") (define-public krona-tools (package (name "krona-tools") - (version "2.6.1") + (version "2.7") (source (origin (method url-fetch) (uri (string-append @@ -291,24 +291,14 @@ parse JSON formatted strings back into the C representation of JSON objects.") version "/KronaTools-" version ".tar")) (sha256 (base32 - "1fj5mf6wbwz7v74n2safbw7fpw32fik19vf0wdbc2srn82i8fiwz")))) + "0wvgllcqscsfb4xc09y3fqhx8i38pmr4w55vjs5y79wx56n710iq")))) (build-system perl-build-system) (arguments `(#:phases (modify-phases %standard-phases ;; There is no configure or build steps. (delete 'configure) - (replace 'build - ;; Remove 'use lib' statements from scripts as PERL5LIB is set - ;; correctly during installation. - (lambda _ - (for-each - (lambda (executable) - (display executable)(display "\n") - (substitute* executable - (("use lib \\(`ktGetLibPath`\\);") ""))) - (find-files "scripts/" ".*")) - #t)) + (delete 'build) ;; Install script "install.pl" expects the build directory to remain ;; after installation, creating symlinks etc., so re-implement it ;; here. @@ -325,7 +315,9 @@ parse JSON formatted strings back into the C representation of JSON objects.") (copy-file executable (string-append bin "/kt" script)))) '("ClassifyBLAST" "GetContigMagnitudes" - "GetTaxIDFromGI" + "GetLCA" + "GetTaxIDFromAcc" + "GetTaxInfo" "ImportBLAST" "ImportDiskUsage" "ImportEC" @@ -341,13 +333,11 @@ parse JSON formatted strings back into the C representation of JSON objects.") "ImportTaxonomy" "ImportText" "ImportXML")) - (copy-recursively "data" (string-append perl "/../data")) - (copy-recursively "img" (string-append perl "/../img")) - (copy-recursively "taxonomy" (string-append perl "/../taxonomy")) - (install-file "src/krona-2.0.js" (string-append perl "/../src")) - (substitute* "lib/KronaTools.pm" - (("`ktGetLibPath`") - (string-append "\"" perl "\""))) + (for-each + (lambda (directory) + (copy-recursively directory + (string-append perl "/../" directory))) + (list "data" "img" "taxonomy" "src")) (install-file "lib/KronaTools.pm" perl)))) (add-after 'install 'wrap-program (lambda* (#:key inputs outputs #:allow-other-keys) |