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-rw-r--r--gnu/packages/python.scm59
-rw-r--r--gnu/packages/statistics.scm58
2 files changed, 58 insertions, 59 deletions
diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index a1a9b44dc4..5a32681643 100644
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@ -120,7 +120,6 @@
#:use-module (gnu packages search)
#:use-module (gnu packages shells)
#:use-module (gnu packages ssh)
- #:use-module (gnu packages statistics)
#:use-module (gnu packages terminals)
#:use-module (gnu packages tex)
#:use-module (gnu packages texinfo)
@@ -3731,64 +3730,6 @@ those files. It can also efficiently manipulate ranges of integers using set
operators such as union, intersection, and difference.")
(license license:asl2.0)))
-(define-public python-rpy2
- (package
- (name "python-rpy2")
- (version "2.9.4")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "rpy2" version))
- (sha256
- (base32
- "0bl1d2qhavmlrvalir9hmkjh74w21vzkvc2sg3cbb162s10zfmxy"))))
- (build-system python-build-system)
- (arguments
- '(#:modules ((ice-9 ftw)
- (srfi srfi-1)
- (srfi srfi-26)
- (guix build utils)
- (guix build python-build-system))
- #:phases
- (modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key outputs inputs #:allow-other-keys)
- (let ((cwd (getcwd)))
- (setenv "PYTHONPATH"
- (string-append cwd "/build/"
- (find (cut string-prefix? "lib" <>)
- (scandir (string-append cwd "/build")))
- ":"
- (getenv "PYTHONPATH"))))
- (invoke "python" "-m" "rpy2.tests" "-v"))))))
- (propagated-inputs
- `(("python-six" ,python-six)
- ("python-jinja2" ,python-jinja2)
- ("python-pytz" ,python-pytz)))
- (inputs
- `(("readline" ,readline)
- ("icu4c" ,icu4c)
- ("pcre" ,pcre)
- ("r-minimal" ,r-minimal)
- ("r-survival" ,r-survival)
- ("r-ggplot2" ,r-ggplot2)
- ("r-rsqlite" ,r-rsqlite)
- ("r-dplyr" ,r-dplyr)
- ("r-dbplyr" ,r-dbplyr)
- ("python-numpy" ,python-numpy)))
- (native-inputs
- `(("zlib" ,zlib)))
- (home-page "https://rpy2.bitbucket.io/")
- (synopsis "Python interface to the R language")
- (description "rpy2 is a redesign and rewrite of rpy. It is providing a
-low-level interface to R from Python, a proposed high-level interface,
-including wrappers to graphical libraries, as well as R-like structures and
-functions.")
- ;; Any of these licenses can be picked for the R interface. The whole
- ;; project is released under GPLv2+ according to the license declaration
- ;; in "setup.py".
- (license (list license:mpl2.0 license:gpl2+ license:lgpl2.1+))))
-
(define-public python-scipy
(package
(name "python-scipy")
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index cc879be99c..1e28b9234b 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -5711,6 +5711,64 @@ plotting function (and equivalents of curve, density, acf and barplot) as well
as a boxplot function.")
(license license:lgpl3+)))
+(define-public python-rpy2
+ (package
+ (name "python-rpy2")
+ (version "2.9.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "rpy2" version))
+ (sha256
+ (base32
+ "0bl1d2qhavmlrvalir9hmkjh74w21vzkvc2sg3cbb162s10zfmxy"))))
+ (build-system python-build-system)
+ (arguments
+ '(#:modules ((ice-9 ftw)
+ (srfi srfi-1)
+ (srfi srfi-26)
+ (guix build utils)
+ (guix build python-build-system))
+ #:phases
+ (modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key outputs inputs #:allow-other-keys)
+ (let ((cwd (getcwd)))
+ (setenv "PYTHONPATH"
+ (string-append cwd "/build/"
+ (find (cut string-prefix? "lib" <>)
+ (scandir (string-append cwd "/build")))
+ ":"
+ (getenv "PYTHONPATH"))))
+ (invoke "python" "-m" "rpy2.tests" "-v"))))))
+ (propagated-inputs
+ `(("python-six" ,python-six)
+ ("python-jinja2" ,python-jinja2)
+ ("python-pytz" ,python-pytz)))
+ (inputs
+ `(("readline" ,readline)
+ ("icu4c" ,icu4c)
+ ("pcre" ,pcre)
+ ("r-minimal" ,r-minimal)
+ ("r-survival" ,r-survival)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-rsqlite" ,r-rsqlite)
+ ("r-dplyr" ,r-dplyr)
+ ("r-dbplyr" ,r-dbplyr)
+ ("python-numpy" ,python-numpy)))
+ (native-inputs
+ `(("zlib" ,zlib)))
+ (home-page "https://rpy2.bitbucket.io/")
+ (synopsis "Python interface to the R language")
+ (description "rpy2 is a redesign and rewrite of rpy. It is providing a
+low-level interface to R from Python, a proposed high-level interface,
+including wrappers to graphical libraries, as well as R-like structures and
+functions.")
+ ;; Any of these licenses can be picked for the R interface. The whole
+ ;; project is released under GPLv2+ according to the license declaration
+ ;; in "setup.py".
+ (license (list license:mpl2.0 license:gpl2+ license:lgpl2.1+))))
+
(define-public java-jdistlib
(package
(name "java-jdistlib")