diff options
| -rw-r--r-- | gnu/packages/machine-learning.scm | 49 |
1 files changed, 25 insertions, 24 deletions
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 7790e78779..9aa61bd8f8 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -703,40 +703,41 @@ computing environments.") (define-public python-scikit-learn (package (name "python-scikit-learn") - (version "0.19.1") + (version "0.19.2") (source (origin - (method url-fetch) - (uri (string-append - "https://github.com/scikit-learn/scikit-learn/archive/" - version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/scikit-learn/scikit-learn.git") + (commit version))) + (file-name (git-file-name name version)) (sha256 (base32 - "18n8775kyfwbvcjjjzda9c5sqy4737c0hrmj6qj1ps2jmlqzair9")) + "1dk9hdj01c0bny4ps78b7869fjw9gr6qklxf6wyql8h6nh4k19xm")) (patches (search-patches - "python-scikit-learn-fix-test-non-determinism.patch")))) + "python-scikit-learn-fix-test-non-determinism.patch")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases - (delete 'check) - (add-after 'install 'check - ;; Running tests from the source directory requires - ;; an "inplace" build with paths relative to CWD. - ;; http://scikit-learn.org/stable/developers/advanced_installation.html#testing - ;; Use the installed version instead. - (lambda* (#:key inputs outputs #:allow-other-keys) - (add-installed-pythonpath inputs outputs) - ;; some tests require access to "$HOME" - (setenv "HOME" "/tmp") - ;; Step out of the source directory just to be sure. - (chdir "..") - (invoke "nosetests" "-v" "sklearn")))))) + (add-after 'build 'build-ext + (lambda _ (invoke "python" "setup.py" "build_ext" "--inplace") #t)) + (replace 'check + (lambda _ + ;; Restrict OpenBLAS threads to prevent segfaults while testing! + (setenv "OPENBLAS_NUM_THREADS" "1") + ;; Disable tests that require network access + (delete-file "sklearn/datasets/tests/test_mldata.py") + (delete-file "sklearn/datasets/tests/test_rcv1.py") + (invoke "pytest" "sklearn") + #t)) + ;; FIXME: This fails with permission denied + (delete 'reset-gzip-timestamps)))) (inputs `(("openblas" ,openblas))) (native-inputs - `(("python-nose" ,python-nose) + `(("python-pytest" ,python-pytest) + ("python-pandas" ,python-pandas) ;for tests ("python-cython" ,python-cython))) (propagated-inputs `(("python-numpy" ,python-numpy) @@ -744,8 +745,8 @@ computing environments.") (home-page "http://scikit-learn.org/") (synopsis "Machine Learning in Python") (description - "Scikit-learn provides simple and efficient tools for data -mining and data analysis.") + "Scikit-learn provides simple and efficient tools for data mining and +data analysis.") (license license:bsd-3))) (define-public python2-scikit-learn |