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| -rw-r--r-- | gnu/packages/bioinformatics.scm | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 8b86e52ece..7a6c144e32 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -555,6 +555,40 @@ Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools.") (license license:cecill-c)))) +(define-public bpp-seq + ;; The last release was in 2014 and the recommended way to install from source + ;; is to clone the git repository, so we do this. + ;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page + (let ((commit "6cfa07965ce152e5598a89df2fa80a75973bfa33")) + (package + (name "bpp-seq") + (version (string-append "2.2.0-1." (string-take commit 7))) + (source (origin + (method git-fetch) + (uri (git-reference + (url "http://biopp.univ-montp2.fr/git/bpp-seq") + (commit commit))) + (file-name (string-append name "-" version "-checkout")) + (sha256 + (base32 + "1nys5jq7jqvdg40d91wsmj3q2yzy4276cp7sp44n67p468f27zf2")))) + (build-system cmake-build-system) + (arguments + `(#:parallel-build? #f + ;; If out-of-source, test data is not copied into the build directory + ;; so the tests fail. + #:out-of-source? #f)) + (inputs + `(("bpp-core" ,bpp-core) + ("gcc" ,gcc-5))) ; Use GCC 5 as per 'bpp-core'. + (home-page "http://biopp.univ-montp2.fr") + (synopsis "Bio++ sequence library") + (description + "Bio++ is a set of C++ libraries for Bioinformatics, including sequence +analysis, phylogenetics, molecular evolution and population genetics. This +library provides sequence-related modules.") + (license license:cecill-c)))) + (define-public blast+ (package (name "blast+") |