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| -rw-r--r-- | gnu/packages/bioconductor.scm | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index e43b3ff928..4c212ecf02 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -114,3 +114,36 @@ region sets and other genomic features.") ChIP-seq experiments using affinity (quantitative) data. Also enables occupancy (overlap) analysis and plotting functions.") (license license:artistic2.0))) + +(define-public r-ripseeker + (package + (name "r-ripseeker") + (version "1.18.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "RIPSeeker" version)) + (sha256 + (base32 + "0bqkzwrncww7il36273chkd3gfxmii7p566ycki9qij419pwr35y")))) + (properties `((upstream-name . "RIPSeeker"))) + (build-system r-build-system) + (propagated-inputs + `(("r-s4vectors" ,r-s4vectors) + ("r-iranges" ,r-iranges) + ("r-genomicranges" ,r-genomicranges) + ("r-summarizedexperiment" ,r-summarizedexperiment) + ("r-rsamtools" ,r-rsamtools) + ("r-genomicalignments" ,r-genomicalignments) + ("r-rtracklayer" ,r-rtracklayer))) + (home-page "http://bioconductor.org/packages/RIPSeeker") + (synopsis + "Identifying protein-associated transcripts from RIP-seq experiments") + (description + "This package infers and discriminates RIP peaks from RIP-seq alignments +using two-state HMM with negative binomial emission probability. While +RIPSeeker is specifically tailored for RIP-seq data analysis, it also provides +a suite of bioinformatics tools integrated within this self-contained software +package comprehensively addressing issues ranging from post-alignments +processing to visualization and annotation.") + (license license:gpl2))) |