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| -rw-r--r-- | gnu/packages/python.scm | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 4f7b1aae08..7ddfcc6ffe 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -2598,6 +2598,39 @@ toolkits.") (package-propagated-inputs matplotlib)))))))) +(define-public python2-pysnptools + (package + (name "python2-pysnptools") + (version "0.2.13") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/p/pysnptools" + "/pysnptools-" version ".zip")) + (sha256 + (base32 + "1rzf5qvwfvd2pp84b14pb2gdvxdk5avnj7rb41ac8gndpkr9g6ib")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2)) ; only Python 2.7 is supported + (propagated-inputs + `(("python2-numpy" ,python2-numpy) + ("python2-scipy" ,python2-scipy) + ("python2-pandas" ,python2-pandas) + ("python2-cython" ,python2-cython))) + (native-inputs + `(("unzip" ,unzip) + ("python2-setuptools" ,python2-setuptools))) + (home-page "http://research.microsoft.com/en-us/um/redmond/projects/mscompbio/") + (synopsis "Library for reading and manipulating genetic data") + (description + "PySnpTools is a library for reading and manipulating genetic data. It +can, for example, efficiently read whole PLINK *.bed/bim/fam files or parts of +those files. It can also efficiently manipulate ranges of integers using set +operators such as union, intersection, and difference.") + (license asl2.0))) + (define-public python-scipy (package (name "python-scipy") |