diff options
| -rw-r--r-- | gnu/local.mk | 2 | ||||
| -rw-r--r-- | gnu/packages/maths.scm | 65 | ||||
| -rw-r--r-- | gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch | 82 |
3 files changed, 119 insertions, 30 deletions
diff --git a/gnu/local.mk b/gnu/local.mk index e70715000a..4af79f0caf 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -31,6 +31,7 @@ # Copyright © 2020 R Veera Kumar <vkor@vkten.in> # Copyright © 2020 Nicolò Balzarotti <nicolo@nixo.xyz> # Copyright © 2020 Michael Rohleder <mike@rohleder.de> +# Copyright © 2020 Felix Gruber <felgru@posteo.net> # # This file is part of GNU Guix. # @@ -844,6 +845,7 @@ dist_patch_DATA = \ %D%/packages/patches/doxygen-test.patch \ %D%/packages/patches/dstat-fix-crash-when-specifying-delay.patch \ %D%/packages/patches/dstat-skip-devices-without-io.patch \ + %D%/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch \ %D%/packages/patches/dvd+rw-tools-add-include.patch \ %D%/packages/patches/eigen-stabilise-sparseqr-test.patch \ %D%/packages/patches/einstein-build.patch \ diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 7db2b31012..73ee161e81 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -4661,7 +4661,7 @@ linear algebra primitives specifically targeting graph analytics.") (define-public dune-common (package (name "dune-common") - (version "2.6.0") + (version "2.7.0") (source (origin (method url-fetch) @@ -4669,7 +4669,7 @@ linear algebra primitives specifically targeting graph analytics.") version "/dune-common-" version ".tar.gz")) (sha256 (base32 - "019wcr1qf7jwyxx1y5y290wdlglylskvbb2m01ljkzcza2xnlmhw")))) + "140q1zh44cr5yrjwg4b5ga803rkqv55vk30l2cqm29aklj1wb0rw")))) (build-system cmake-build-system) (arguments `(#:phases @@ -4699,7 +4699,7 @@ Differences} (FD).") (define-public dune-geometry (package (name "dune-geometry") - (version "2.6.0") + (version "2.7.0") (source (origin (method url-fetch) @@ -4707,7 +4707,7 @@ Differences} (FD).") version "/dune-geometry-" version ".tar.gz")) (sha256 (base32 - "0hlaaxjyv9j05blasvb67sy02hd0w4g9znf68gdh3l731dd1aqbn")))) + "1cicvlwbyyw76npicnblxckyvhbfn3ip8isydiv3hlrlz8zcg5nr")))) (build-system cmake-build-system) (arguments `(#:phases @@ -4739,15 +4739,17 @@ This package contains the basic DUNE geometry classes.") (define-public dune-uggrid (package (name "dune-uggrid") - (version "2.6.0") + (version "2.7.0") (source (origin - (method url-fetch) - (uri (string-append "https://dune-project.org/download/" - version "/dune-uggrid-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://gitlab.dune-project.org/staging/dune-uggrid.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 (base32 - "05l7a1gb78mny49anyxk6rjvn66rhgm30y72v5cjg0m5kfgr1a1f")))) + "192miqgmfj6jwk969gydzpbv9ki7jg5nky3ydnrwa2nq29b5xkh0")))) (build-system cmake-build-system) (arguments `(#:phases @@ -4774,7 +4776,7 @@ This package contains the DUNE UG grid classes.") (define-public dune-grid (package (name "dune-grid") - (version "2.6.0") + (version "2.7.0") (source (origin (method url-fetch) @@ -4782,7 +4784,7 @@ This package contains the DUNE UG grid classes.") version "/dune-grid-" version ".tar.gz")) (sha256 (base32 - "1jp4vscm9yb9xg0lh7apzccfkhvgbnk652yahigmh3cvzpl4acd0")))) + "17fjz30qazjgl11sryyxnw9klai4yz1ji4bs68013xcxc5hdv27s")))) (build-system cmake-build-system) (arguments `(#:phases @@ -4817,7 +4819,7 @@ This package contains the basic DUNE grid classes.") (define-public dune-istl (package (name "dune-istl") - (version "2.6.0") + (version "2.7.0") (source (origin (method url-fetch) @@ -4825,7 +4827,8 @@ This package contains the basic DUNE grid classes.") version "/dune-istl-" version ".tar.gz")) (sha256 (base32 - "0l2gyrvys5w6wsmk0ckbb7295s80b7yk7qrl7x66akv2jv1nzq2w")))) + "0gl3wgz5rs6sb4m83440ny45sbx7z7lnbi3gx6r9nm3rvy5j33f9")) + (patches (search-patches "dune-istl-2.7-fix-non-mpi-tests.patch")))) (build-system cmake-build-system) (arguments `(#:phases @@ -4863,7 +4866,7 @@ aggregation-based algebraic multigrid.") (define-public dune-localfunctions (package (name "dune-localfunctions") - (version "2.6.0") + (version "2.7.0") (source (origin (method url-fetch) @@ -4871,7 +4874,7 @@ aggregation-based algebraic multigrid.") version "/dune-localfunctions-" version ".tar.gz")) (sha256 (base32 - "19c6zjinwwpy8jh4v4prhphyd438rapd4x80fj93apmwgw04nrhl")))) + "1yih59h6vngii696bx1c2vil02lriij4kz0nc583mjn9kiaqxfqd")))) (build-system cmake-build-system) (arguments `(#:phases @@ -4906,15 +4909,17 @@ assemble global function spaces on finite-element grids.") (define-public dune-alugrid (package (name "dune-alugrid") - (version "2.6.0") + (version "2.7.0-git-81d35682") (source (origin - (method url-fetch) - (uri (string-append "https://dune-project.org/download/" - version "/dune-alugrid-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://gitlab.dune-project.org/extensions/dune-alugrid.git") + (commit "81d356827c84454b971937db02c02b90bbcd7fe5"))) + (file-name (git-file-name name version)) (sha256 (base32 - "1l9adgyjpra8mvwm445s0lpjshnb63jag85fb2hisbjn6bm320yj")))) + "0z54lwfp53prcrs94k8gwh047l9z642jll3l56xlyfr69z0b2zz1")))) (build-system cmake-build-system) (arguments `(#:phases @@ -4954,17 +4959,17 @@ cubes.") (define-public dune-subgrid (package (name "dune-subgrid") - (version "2.6.0") + (version "2.7.0-git-2103a363") (source (origin (method git-fetch) (uri (git-reference (url "https://git.imp.fu-berlin.de/agnumpde/dune-subgrid") - (commit "releases/2.6-1"))) + (commit "2103a363f32e8d7b60e66eee7ddecf969f6cf762"))) (file-name (git-file-name name version)) (sha256 (base32 - "1gcv35rx3knqd54r4pp9rzd639db4j8w2r2ibq43w1mgwdcqhs64")))) + "1wsjlypd3835c3arqjkw836cxx5q67zy447wa65q634lf6f6v9ia")))) (build-system cmake-build-system) (arguments `(#:phases @@ -4994,7 +4999,7 @@ provides the full grid interface including adaptive mesh refinement.") (define-public dune-typetree (package (name "dune-typetree") - (version "2.6.0") + (version "2.7.0") (source (origin (method git-fetch) @@ -5004,7 +5009,7 @@ provides the full grid interface including adaptive mesh refinement.") (file-name (git-file-name name version)) (sha256 (base32 - "0mnv6w2f22lz3j4bdpdjq55vjm8xxfx9v4vvhg9bd36xpsbjpjp9")))) + "1rhv25yg0q1hw50c8wlfqhgwrjl4mh62zq9v14ilwgzbfgxmpiy7")))) (build-system cmake-build-system) (arguments `(#:phases @@ -5033,7 +5038,7 @@ operating on statically typed trees of objects.") (define-public dune-functions (package (name "dune-functions") - (version "2.6.0") + (version "2.7.0") (source (origin (method git-fetch) @@ -5043,7 +5048,7 @@ operating on statically typed trees of objects.") (file-name (git-file-name name version)) (sha256 (base32 - "1an8gb477n8j0kzpbrv7nr1snh8pxip0gsxq6w63jc83gg3dj200")))) + "1na4gcih0kin37ksj2xj07ds04v7zx53pjdhm1hzy55jjfqdjk8h")))) (build-system cmake-build-system) (arguments `(#:phases @@ -5083,17 +5088,17 @@ implemented as callable objects, and bases of finite element spaces.") (define-public dune-pdelab (package (name "dune-pdelab") - (version "2.6.0-rc1") + (version "2.7.0-git-476fe437") (source (origin (method git-fetch) (uri (git-reference (url "https://gitlab.dune-project.org/pdelab/dune-pdelab") - (commit (string-append "v" version)))) + (commit "476fe43763fa6f459c5e4658e2a2b4b5582db834"))) (file-name (git-file-name name version)) (sha256 (base32 - "07g0s9448z65vjrq88g5rv3340iifil85k170n8kbqchsvi4ny5v")))) + "0cs36piqzn6rq0j2ih3ab3q3q9yg199wk72k5qi86pkzh7i7fdn1")))) (build-system cmake-build-system) (arguments '(#:tests? #f)) ; XXX: the tests cannot be compiled (inputs diff --git a/gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch b/gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch new file mode 100644 index 0000000000..ee2bb8f676 --- /dev/null +++ b/gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch @@ -0,0 +1,82 @@ +Fix build of dune-istl's tests + +Patch copied from upstream source repository: + +https://gitlab.dune-project.org/core/dune-istl/-/commit/9eee3462df5a64881c08574f9291e76db398de0a + +From 9eee3462df5a64881c08574f9291e76db398de0a Mon Sep 17 00:00:00 2001 +From: Felix Gruber <felgru@posteo.net> +Date: Sat, 4 Apr 2020 15:27:09 +0200 +Subject: [PATCH] make tests succeed when MPI is disabled + +When MPI is not available or explicitly disabled with the CMake build +option -DCMAKE_IDSABLE_FIND_PACKAGE_MPI=TRUE, some tests were unable to +build. + +The tests created from solverfactorytest.cc.in and part of +scalarproductstest.cc use Dune::OwnerOverlapCopyCommunication which is +defined behind `#if HAVE_MPI` and is thus not available in a non-MPI +build. I've thus disabled those tests when MPI is unavailable. + +The matrixmarkettest did not work without MPI, as it contained some code +using the wrong template parameters when HAVE_MPI was not set. Those +template paramters have been fixed now. + +I've confirmed, that after my changes `make build_tests` succeeds to +build all tests and that those tests run without failure. +--- + dune/istl/test/CMakeLists.txt | 3 ++- + dune/istl/test/matrixmarkettest.cc | 2 +- + dune/istl/test/scalarproductstest.cc | 2 ++ + 3 files changed, 5 insertions(+), 2 deletions(-) + +diff --git a/dune/istl/test/CMakeLists.txt b/dune/istl/test/CMakeLists.txt +index ffd87969..2c7b2387 100644 +--- a/dune/istl/test/CMakeLists.txt ++++ b/dune/istl/test/CMakeLists.txt +@@ -77,7 +77,8 @@ set(DUNE_TEST_FACTORY_BLOCK_SIZES + function(add_factory_test BLOCK) + STRING(REGEX REPLACE "[^a-zA-Z0-9]" "" BLOCK_CLEAN ${BLOCK}) + configure_file(solverfactorytest.cc.in solverfactorytest_${BLOCK_CLEAN}.cc) +- dune_add_test(SOURCES ${CMAKE_CURRENT_BINARY_DIR}/solverfactorytest_${BLOCK_CLEAN}.cc) ++ dune_add_test(SOURCES ${CMAKE_CURRENT_BINARY_DIR}/solverfactorytest_${BLOCK_CLEAN}.cc ++ CMAKE_GUARD HAVE_MPI) + endfunction(add_factory_test) + + foreach(FIELD_TYPE ${DUNE_TEST_FACTORY_FIELD_TYPES}) +diff --git a/dune/istl/test/matrixmarkettest.cc b/dune/istl/test/matrixmarkettest.cc +index b335afe6..ce30e8ae 100644 +--- a/dune/istl/test/matrixmarkettest.cc ++++ b/dune/istl/test/matrixmarkettest.cc +@@ -52,7 +52,7 @@ int testMatrixMarket(int N) + storeMatrixMarket(mat, std::string("testmat"), comm); + storeMatrixMarket(bv, std::string("testvec"), comm, false); + #else +- typedef Dune::MatrixAdapter<BCRSMat,BVector,BVector> Operator; ++ typedef Dune::MatrixAdapter<Matrix,Vector,Vector> Operator; + Operator op(mat); + op.apply(bv, cv); + +diff --git a/dune/istl/test/scalarproductstest.cc b/dune/istl/test/scalarproductstest.cc +index 452b1d89..f46ce2a9 100644 +--- a/dune/istl/test/scalarproductstest.cc ++++ b/dune/istl/test/scalarproductstest.cc +@@ -115,6 +115,7 @@ int main(int argc, char** argv) + scalarProductTest<ScalarProduct, Vector>(scalarProduct,numBlocks); + } + ++#if HAVE_MPI + // Test the ParallelScalarProduct class + { + using Vector = BlockVector<FieldVector<double,BlockSize> >; +@@ -139,6 +140,7 @@ int main(int argc, char** argv) + ScalarProduct scalarProduct(communicator,SolverCategory::nonoverlapping); + scalarProductTest<ScalarProduct, Vector>(scalarProduct,numBlocks); + } ++#endif + + return t.exit(); + } +-- +2.25.1 + |