diff options
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f5901703ce..f976cad22f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1767,8 +1767,8 @@ well as many of the command line options.") (add-after 'unpack 'keep-references-to-bwa (lambda* (#:key inputs #:allow-other-keys) (substitute* "bwameth.py" - (("bwa mem") - (string-append (which "bwa") " mem")) + (("bwa (mem|index)" _ command) + (string-append (which "bwa") " " command)) ;; There's an ill-advised check for "samtools" on PATH. (("^checkX.*") "")) #t))))) |