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| -rw-r--r-- | gnu/packages/bioinformatics.scm | 41 |
1 files changed, 41 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c797f5f2d6..8e9f1707a5 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1194,6 +1194,47 @@ other types of unwanted sequence from high-throughput sequencing reads.") files.") (license license:expat))) +(define-public python-pybigwig + (package + (name "python-pybigwig") + (version "0.2.5") + (source (origin + (method url-fetch) + (uri (pypi-uri "pyBigWig" version)) + (sha256 + (base32 + "0yrpdxg3y0sny25x4w22lv1k47jzccqjmg7j4bp0hywklvp0hg7d")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Delete bundled libBigWig sources + (delete-file-recursively "libBigWig"))))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'link-with-libBigWig + (lambda* (#:key inputs #:allow-other-keys) + (substitute* "setup.py" + (("libs=\\[") "libs=[\"BigWig\", ")) + #t))))) + (inputs + `(("libbigwig" ,libbigwig) + ("zlib" ,zlib) + ("curl" ,curl))) + (home-page "https://github.com/dpryan79/pyBigWig") + (synopsis "Access bigWig files in Python using libBigWig") + (description + "This package provides Python bindings to the libBigWig library for +accessing bigWig files.") + (license license:expat))) + +(define-public python2-pybigwig + (let ((pybigwig (package-with-python2 python-pybigwig))) + (package (inherit pybigwig) + (native-inputs + `(("python-setuptools" ,python2-setuptools)))))) + (define-public deeptools (package (name "deeptools") |