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authorRicardo Wurmus <rekado@elephly.net>2019-09-05 11:46:13 +0200
committerRicardo Wurmus <rekado@elephly.net>2019-09-05 11:46:29 +0200
commit6b5f59c7a6a6dfc8298b83a5bd9ac65fec7a09d6 (patch)
tree6c87ee3d019678bd0f27a155771fce5e6760646e /gnu
parent7d2cb646f7d0619ab924dd168d92fc176df629f0 (diff)
downloadpatches-6b5f59c7a6a6dfc8298b83a5bd9ac65fec7a09d6.tar
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gnu: Add r-bigmelon.
* gnu/packages/bioconductor.scm (r-bigmelon): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioconductor.scm28
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 8c57bd5788..3ba5415597 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -5413,3 +5413,31 @@ byte. Data compression and decompression are available with relatively
efficient random access. It is also allowed to read a GDS file in parallel
with multiple R processes supported by the package @code{parallel}.")
(license license:lgpl3)))
+
+(define-public r-bigmelon
+ (package
+ (name "r-bigmelon")
+ (version "1.10.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "bigmelon" version))
+ (sha256
+ (base32
+ "0269kf3d34dbng3swk7pclpk02vy4k3askygmzi5my3fqyfzdkj9"))))
+ (properties `((upstream-name . "bigmelon")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-gdsfmt" ,r-gdsfmt)
+ ("r-geoquery" ,r-geoquery)
+ ("r-methylumi" ,r-methylumi)
+ ("r-minfi" ,r-minfi)
+ ("r-watermelon" ,r-watermelon)))
+ (home-page "https://bioconductor.org/packages/bigmelon/")
+ (synopsis "Illumina methylation array analysis for large experiments")
+ (description
+ "This package provides methods for working with Illumina arrays using the
+@code{gdsfmt} package.")
+ (license license:gpl3)))