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authorRicardo Wurmus <rekado@elephly.net>2019-12-18 15:24:21 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-12-18 15:29:07 +0100
commitf388834e1152e18463d64d9b3d2499c4f939bdda (patch)
treeeec57aa4bb8ec057ce37a2deac65d4d6ccf11953 /gnu
parentc373223e635cd8f5f2770dd0b05f3a310fc7f7dd (diff)
downloadpatches-f388834e1152e18463d64d9b3d2499c4f939bdda.tar
patches-f388834e1152e18463d64d9b3d2499c4f939bdda.tar.gz
gnu: Add r-reactomepa.
* gnu/packages/bioconductor.scm (r-reactomepa): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioconductor.scm30
1 files changed, 30 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 89cdda25d9..25481d5b1d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -7038,3 +7038,33 @@ visualize bioinformatics analyses.")
and automates the conversion of node identifiers (e.g. from Entrez IDs to gene
symbols).")
(license license:agpl3+)))
+
+(define-public r-reactomepa
+ (package
+ (name "r-reactomepa")
+ (version "1.30.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ReactomePA" version))
+ (sha256
+ (base32
+ "1vwc9kj1l4yi7c4f4lnq0i3wl2nrmmhcxyakz8qak122fi92z3j1"))))
+ (properties `((upstream-name . "ReactomePA")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-dose" ,r-dose)
+ ("r-enrichplot" ,r-enrichplot)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-ggraph" ,r-ggraph)
+ ("r-graphite" ,r-graphite)
+ ("r-igraph" ,r-igraph)
+ ("r-reactome-db" ,r-reactome-db)))
+ (home-page "https://guangchuangyu.github.io/software/ReactomePA")
+ (synopsis "Reactome pathway analysis")
+ (description
+ "This package provides functions for pathway analysis based on the
+REACTOME pathway database. It implements enrichment analysis, gene set
+enrichment analysis and several functions for visualization.")
+ (license license:gpl2)))