diff options
| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2016-06-14 14:50:30 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2016-06-15 17:08:08 +0200 |
| commit | 4714d521e3b5bcc6e2800ab377cb470cab09a595 (patch) | |
| tree | 14ed38acd9f26bcf0b636acf8f3efdff1cfbf3d6 /gnu | |
| parent | c4e48b68bdf41e7f6805473fc4f545b215251c6d (diff) | |
| download | patches-4714d521e3b5bcc6e2800ab377cb470cab09a595.tar patches-4714d521e3b5bcc6e2800ab377cb470cab09a595.tar.gz | |
gnu: Add r-bsgenome-mmusculus-ucsc-mm10.
* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm10): New
variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 58877f7c61..04ed769cd8 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5019,6 +5019,38 @@ by UCSC (hg19, February 2009) and stored in Biostrings objects.") provided by UCSC (mm9, July 2007) and stored in Biostrings objects.") (license license:artistic2.0))) +(define-public r-bsgenome-mmusculus-ucsc-mm10 + (package + (name "r-bsgenome-mmusculus-ucsc-mm10") + (version "1.4.0") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "http://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "BSgenome.Mmusculus.UCSC.mm10_" + version ".tar.gz")) + (sha256 + (base32 + "12s0nm2na9brjad4rn9l7d3db2aj8qa1xvz0y1k7gk08wayb6bkf")))) + (properties + `((upstream-name . "BSgenome.Mmusculus.UCSC.mm10"))) + (build-system r-build-system) + ;; As this package provides little more than a very large data file it + ;; doesn't make sense to build substitutes. + (arguments `(#:substitutable? #f)) + (propagated-inputs + `(("r-bsgenome" ,r-bsgenome))) + (home-page + "http://www.bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10/") + (synopsis "Full genome sequences for Mouse") + (description + "This package provides full genome sequences for Mus +musculus (Mouse) as provided by UCSC (mm10, December 2011) and stored +in Biostrings objects.") + (license license:artistic2.0))) + (define-public r-bsgenome-celegans-ucsc-ce6 (package (name "r-bsgenome-celegans-ucsc-ce6") |