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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-29 14:59:23 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-29 17:13:45 +0100 |
| commit | 229f97c37aef0f50d144524275315fd36cd5973a (patch) | |
| tree | 7fe7657e25779865526489fd76d59270dbad6959 /gnu | |
| parent | 051e8e1a5bec01952012cf7f1903cd72add0e25c (diff) | |
| download | patches-229f97c37aef0f50d144524275315fd36cd5973a.tar patches-229f97c37aef0f50d144524275315fd36cd5973a.tar.gz | |
gnu: Add r-motiv.
* gnu/packages/bioconductor.scm (r-motiv): New variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 6df46ef379..63a1c9923c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3209,3 +3209,34 @@ fitting a three-component normal mixture on z-scores.") "rGADEM is an efficient de novo motif discovery tool for large-scale genomic sequence data.") (license license:artistic2.0))) + +(define-public r-motiv + (package + (name "r-motiv") + (version "1.38.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "MotIV" version)) + (sha256 + (base32 + "1qrpydwc5bn8f0843qkyhw6920xk8kvq452ird0ij96g6faiv9a8")))) + (properties `((upstream-name . "MotIV"))) + (build-system r-build-system) + (inputs + `(("gsl" ,gsl))) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-biostrings" ,r-biostrings) + ("r-iranges" ,r-iranges) + ("r-lattice" ,r-lattice) + ("r-rgadem" ,r-rgadem) + ("r-s4vectors" ,r-s4vectors))) + (home-page "https://bioconductor.org/packages/MotIV/") + (synopsis "Motif identification and validation") + (description + "This package is used for the identification and validation of sequence +motifs. It makes use of STAMP for comparing a set of motifs to a given +database (e.g. JASPAR). It can also be used to visualize motifs, motif +distributions, modules and filter motifs.") + (license license:gpl2))) |