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| author | Roel Janssen <roel@gnu.org> | 2016-04-04 20:04:48 +0200 |
|---|---|---|
| committer | Alex Kost <alezost@gmail.com> | 2016-04-05 11:29:32 +0300 |
| commit | 9b36e256076a4c28051d0e0735e0f990c2dc0834 (patch) | |
| tree | 288184a15dc2a03d2396237a42a2bf34efcef6f9 /gnu | |
| parent | 17130e3919326937b244bb1d3dfec59e48cc1c92 (diff) | |
| download | patches-9b36e256076a4c28051d0e0735e0f990c2dc0834.tar patches-9b36e256076a4c28051d0e0735e0f990c2dc0834.tar.gz | |
gnu: vcftools: Update to 0.1.14.
* gnu/packages/bioinformatics.scm (vcftools): Update to 0.1.14.
[arguments]: Do not modify phases as it is not needed anymore.
[native-inputs]: Add 'pkg-config'.
[home-page]: Update to new location.
Signed-off-by: Alex Kost <alezost@gmail.com>
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 23 |
1 files changed, 9 insertions, 14 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 250deb9b6b..0afc0a6979 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3692,15 +3692,15 @@ Cuffdiff or Ballgown programs.") (define-public vcftools (package (name "vcftools") - (version "0.1.12b") + (version "0.1.14") (source (origin (method url-fetch) (uri (string-append - "mirror://sourceforge/vcftools/vcftools_" - version ".tar.gz")) + "https://github.com/vcftools/vcftools/releases/download/v" + version "/vcftools-" version ".tar.gz")) (sha256 (base32 - "148al9h7f8g8my2qdnpax51kdd2yjrivlx6frvakf4lz5r8j88wx")))) + "10l5c07z9p4i9pr4gl54b2c9h6ndhqlbq1rashg2zcgwkbfrkmvn")))) (build-system gnu-build-system) (arguments `(#:tests? #f ; no "check" target @@ -3708,18 +3708,13 @@ Cuffdiff or Ballgown programs.") "CFLAGS=-O2" ; override "-m64" flag (string-append "PREFIX=" (assoc-ref %outputs "out")) (string-append "MANDIR=" (assoc-ref %outputs "out") - "/share/man/man1")) - #:phases - (alist-cons-after - 'unpack 'patch-manpage-install - (lambda _ - (substitute* "Makefile" - (("cp \\$\\{PREFIX\\}/cpp/vcftools.1") "cp ./cpp/vcftools.1"))) - (alist-delete 'configure %standard-phases)))) + "/share/man/man1")))) + (native-inputs + `(("pkg-config" ,pkg-config))) (inputs `(("perl" ,perl) ("zlib" ,zlib))) - (home-page "http://vcftools.sourceforge.net/") + (home-page "https://vcftools.github.io/") (synopsis "Tools for working with VCF files") (description "VCFtools is a program package designed for working with VCF files, such @@ -3727,7 +3722,7 @@ as those generated by the 1000 Genomes Project. The aim of VCFtools is to provide easily accessible methods for working with complex genetic variation data in the form of VCF files.") ;; The license is declared as LGPLv3 in the README and - ;; at http://vcftools.sourceforge.net/license.html + ;; at https://vcftools.github.io/license.html (license license:lgpl3))) (define-public vsearch |