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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-09-15 22:41:03 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-09-15 22:41:03 +0200 |
| commit | df8576e5c93e765fc4f75c47698342b1f7aa9642 (patch) | |
| tree | 7ac2dd7f44a3dfb539a9f6fe46d76a685490562a /gnu | |
| parent | fc3719cc0f91644b56e7572a81669398b5fd1c8d (diff) | |
| download | patches-df8576e5c93e765fc4f75c47698342b1f7aa9642.tar patches-df8576e5c93e765fc4f75c47698342b1f7aa9642.tar.gz | |
gnu: Add r-variantfiltering.
* gnu/packages/bioconductor.scm (r-variantfiltering): New variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 47 |
1 files changed, 47 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 9fce21dc00..4f2d97025a 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -5838,3 +5838,50 @@ course data which includes dimensionality reduction, clustering, two-sample differential expression testing and gene ranking techniques. The package also provides methods for retrieving enriched pathways.") (license license:lgpl3+))) + +(define-public r-variantfiltering + (package + (name "r-variantfiltering") + (version "1.20.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "VariantFiltering" version)) + (sha256 + (base32 + "0vpghxacqcbaxx2scb5gfhcmfpw1lkls7h6qnbwbnmjwy01q2p17")))) + (properties + `((upstream-name . "VariantFiltering"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-biocparallel" ,r-biocparallel) + ("r-biostrings" ,r-biostrings) + ("r-bsgenome" ,r-bsgenome) + ("r-dt" ,r-dt) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicfeatures" ,r-genomicfeatures) + ("r-genomicranges" ,r-genomicranges) + ("r-genomicscores" ,r-genomicscores) + ("r-graph" ,r-graph) + ("r-gviz" ,r-gviz) + ("r-iranges" ,r-iranges) + ("r-rbgl" ,r-rbgl) + ("r-rsamtools" ,r-rsamtools) + ("r-s4vectors" ,r-s4vectors) + ("r-shiny" ,r-shiny) + ("r-shinyjs" ,r-shinyjs) + ("r-shinythemes" ,r-shinythemes) + ("r-shinytree" ,r-shinytree) + ("r-summarizedexperiment" ,r-summarizedexperiment) + ("r-variantannotation" ,r-variantannotation) + ("r-xvector" ,r-xvector))) + (home-page "https://github.com/rcastelo/VariantFiltering") + (synopsis "Filtering of coding and non-coding genetic variants") + (description + "Filter genetic variants using different criteria such as inheritance +model, amino acid change consequence, minor allele frequencies across human +populations, splice site strength, conservation, etc.") + (license license:artistic2.0))) |